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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTTTGGGCTCCTCGGCCTCGGCGTCCTCGCTCGCCGTCGCGCCCGCGCGGGCAGGGCACGGGAGGGAAGCCATGAACTGCCTCCAGAACCTGCTCAAgtaagtgagtgcggtggccgaggccccggcgcctcctcctcctccccgcttcgattcgattcgacacttgtttcgcctgttcgtcactgctggatttcctcgttttcgcccag

Basic information

species Oryza sativa
transcript LOC_Os03g01750.5
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01750.5 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 1
TATTTTTGGGCTCCTCGGCCT---CGGCGTCCTCGC-TCGCCGTCGCGCCCGCGCGGGCAGGGCACGGGAGGGAAGCCATGAACTGCCTCCAGAACCTGCTCAAgtaagtgagtgcggtggccgaggccccggcgcctcctcctcctccccgcttcgattcga--ttcgacacttgtttcgcctgttcgtcactgctggatttcctcgttttcgcccag
 |||| |  |   |  | ||      || ||| ||| |||||||| ||| |||||  || |||| ||   ||||||||||||||||||||||||||||||||||||||| |          ||    || |    |||||  |  |   ||| |||| | ||   | ||  |      ||||||| |     | ||| |  |      |||||  ||||
-ATTTCTACGGGACGGGACCCGCGTTGCTTCCCCGCCTCGCCGTCCCGCGCGCGCCAGCCGGGCCCG---GGGAAGCCATGAACTGCCTCCAGAACCTGCTCAAgtaagcg----------cc----cctccctccctccctcctcgttccgtttcggtccgtcctccggtaacgcgctcgcctgct-----ccgcttggctcatggattttcctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29678199|gb|CB674474.1|CB674474
EST:     CGGGCAGGGCACGGGAGGGAAGCCATGAACTGCCTCCAGAACCTGCTCAA                         GGAGCCTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAA
genomic: CGGGCAGGGCACGGGAGGGAAGCCATGAACTGCCTCCAGAACCTGCTCAAgtaagtgagt ... tttcgcccagGGAGCCTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAA