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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCACTCGGATGGCCCGAGAGCGCCAACGCGAGCTCCAGGGGATATCAGGGTATCACATTGTGTCCGAGTTCCCTCACCGCAGCCGCAACCGCATCCAGgttggtctttgcattgcattgcaggaatcggtcatctgtaatgccgacgacggtgctctgagatatgtgttgctttacag

Basic information

species Oryza sativa
transcript LOC_Os02g57750.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57750.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G081965_T01 (Zea mays), 5'ss of exon 1
CATCACTCGGATGGCCCGAGAGCGCCAACGCGAGCTCCAGGGGATATCAGGGTATCACATTGTGTCCGAGTTCCCTCACCGCAGCCGCAACCGCATCCAGgttggtcttt----gcattgcattgcaggaatcggtcatctgtaatgccgacgacggtgctctgagatat--gtgttgct-ttacag
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CATCAGCCGTATGGCCAGGGAGCGTCAGCGCGAGCTGCAGGGCATATCAGGGTACCATGTGGTGTCGGAGTTTCCTCGCCGCAGCCGCAACCGCATCCAGgtgggaacctagcggcattgcattgcacgaaccacttacctgtgaaaccgtgcatgctggtttgtgaaattggtgttttcgtcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58696089|gb|CK084776.1|CK084776
EST:     GATATCACATTGTGTCCGAGTTCCCTCACCGCAGCCGCAACCGCATCCA-                         GGATTGCTTAGGGGGAGGTTCTTGAGGAACGTGGTTCTTCCAGTTGAGGAG
genomic: GGTATCACATTGTGTCCGAGTTCCCTCACCGCAGCCGCAACCGCATCCAGgttggtcttt ... tgctttacagGGATTGCTTAGGGGGAGGTTCTTGAGGAACGTGGTTCTTCCAGTTGAGGAG