Sequence
atgc intronic sequence ATGC exonic sequenceGTCAACAGCCACTGCATCGACTCCATTGATGGCCCCGGATACCGATGCAACTGCTCCCAGGGCTACGAGGGAAACCCCTACCTTGACGGTGGATGCCAAGgtaaaaaaaataaccacacctcccattaaataaagggagaatttgaaccatgccacacaaattttgcaaaatttatgatataccaccctgacctacatgt...
Basic information
species | Oryza sativa |
transcript | LOC_Os02g56420.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86528687|gb|CI168893.1|CI168893EST: CTGCTCCCAGGGCTACGAGGGAAACCCCTACCTTGACGGTGGATGCCAAG GGCATCAGGCGAGTGGACCGGTTTTGACCAGGCAGACTGCACAGTTTCAAG
genomic: CTGCTCCCAGGGCTACGAGGGAAACCCCTACCTTGACGGTGGATGCCAAGgtaaaaaaaa ... ttcttttcagGGCATCAGGCGAGTGGACCGGTTTTGACCAGGCAGACTGCACAGTTTCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAACAGCCACTGCATCGACTCCATTGATGGCCCCGGATACCGATGCAACTGCTCCCAGGGCTACGAGGGAAACCCCTACCTTGACGGTGGATGCCAAGgtaaaaaaaataaccacacctcccattaaataaagggagaatttgaaccatgccacacaaattttgcaaaatttatgatataccaccctgacctacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccct