1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACGACGCACCAACCCACGCCCGAGCCAGAGCCAGGTCGCCGCGCCACCTCTTCGGCTTCGCCGCGCCGCCGCGAGCGGGCGGGGAGACTCCCCACCCCCGgtgagtgcccgcccgcgcagatccgcgcggttctttttttgtggggagaggcgggctgtttttttcttgcggtttggtttgggatttctgaggagagggg...
species | Oryza sativa |
transcript | LOC_Os02g48010.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGAGACTCCCCACCCCCG GGAGGGAGAGGGCGGTTCGTTTATTGGAT-AGCCGTGAGGAAATTGGGAGGEST: gi|88311721|gb|CI574938.1|CI574938
genomic: GGGAGACTCCCCACCCCCGgtgagtgccc ... ggaattgcagGGAGGGAGAGGGCGGTTCGTTTATTGGATGAGCCGTGAGGAAATTGGGAGG
EST: GGGAGACTCCCCACCCCCG GGAGGGAGAGGGCGGTTCGTTTATTGGATGAGCCGTGAGGAAATTGGGAGGEST: gi|29644319|gb|CB649326.1|CB649326
genomic: GGGAGACTCCCCACCCCCGgtgagtgccc ... ggaattgcagGGAGGGAGAGGGCGGTTCGTTTATTGGATGAGCCGTGAGGAAATTGGGAGG
EST: TTCGGCTTCGCCGCGCCGCCGCGAGCGGGCGGGGAGACTCCCCACCCCCG GGAGGGAGAGGGCGGTTCGTTTATTGGATGAGCCGTGAGGAAATTGGGAGG
genomic: TTCGGCTTCGCCGCGCCGCCGCGAGCGGGCGGGGAGACTCCCCACCCCCGgtgagtgccc ... ggaattgcagGGAGGGAGAGGGCGGTTCGTTTATTGGATGAGCCGTGAGGAAATTGGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGACGCACCAACCCACGCCCGAGCCAGAGCCAGGTCGCCGCGCCACCTCTTCGGCTTCGCCGCGCCGCCGCGAGCGGGCGGGGAGACTCCCCACCCCCGgtgagtgcccgcccgcgcagatccgcgcggttctttttttgtggggagaggcgggctgtttttttcttgcggtttggtttgggatttctgaggagagggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggcgg