1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCTCAAGAAGGCCTACGAGCTGTCCGTTCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGGgtataattaatacagacacaacaacacacacaaccaacaaaccagcatcaatttgaacctgcagatctgctgttttctctgatcaattgcttcttttttt...
species | Oryza sativa |
transcript | LOC_Os02g45770.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGG CATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGAEST: gi|88405296|gb|CI586117.1|CI586117
genomic: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGGgtataattaa ... ttttgtgcagCATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGA
EST: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGG CATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGAEST: gi|88313106|gb|CI592390.1|CI592390
genomic: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGGgtataattaa ... ttttgtgcagCATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGA
EST: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGG CATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGAEST: gi|88398634|gb|CI598599.1|CI598599
genomic: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGGgtataattaa ... ttttgtgcagCATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGA
EST: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGG CATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGAEST: gi|88408119|gb|CI601597.1|CI601597
genomic: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGGgtataattaa ... ttttgtgcagCATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGA
EST: CTCATAATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGGGCCGG CATAACAAAGACTTTAGAAAGGTACAAACATTGTTGCTACAATGCTCAAGAEST: gi|88729510|gb|CI753020.1|CI753020
genomic: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGGgtataattaa ... ttttgtgcagCATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGA
EST: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGG CATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGAEST: gi|32948514|gb|BP185086.1|BP185086
genomic: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGGgtataattaa ... ttttgtgcagCATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGA
EST: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGG CATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGA
genomic: CTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGGgtataattaa ... ttttgtgcagCATAACAAAGACTTTAGAAAGGTACCAACATTGTTGCTACAATGCTCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTCAAGAAGGCCTACGAGCTGTCCGTTCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTCGGCAGCGCCGGgtataattaatacagacacaacaacacacacaaccaacaaaccagcatcaatttgaacctgcagatctgctgttttctctgatcaattgcttcttttttt
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