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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGATTACTACCTGAGGAAGAAGGTGGCATCGAAGAAAATCGACCTCGACGTTATAAAAGACGTCGACCTGTACAAAATCGAGCCCTGGGATCTCCAAGgtaattagcatgcatgcaagttgatcgaagaatcaaaaaaatcaaagttaggtttgcgattgaattgagcatccaacatgtacaaatattgcag

Basic information

species Oryza sativa
transcript LOC_Os02g42970.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g42970.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G354151_T01 (Zea mays), 5'ss of exon 3
GTCGATTACTACCTGAGGAAGAAGGTGGCATCGAAGAAAATCGACCTCGACGTTATAAAAGACGTCGACCTGTACAAAATCGAGCCCTGGGATCTCCAAGgtaattagcatgcatgcaagttgatcgaagaatcaaaaaaatcaaagttaggtttgcgattgaattga-gcatccaacatgtacaaatattgcag
|||||||||||||||||||| |||||||| || || || |||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||  || |  |||  |   |||   ||| ||  | | |  || |  |||   |||   | ||| ||  ||| ||   || |       |||||
GTCGATTACTACCTGAGGAACAAGGTGGCGTCCAACAAGATCGACCTTGACGTCATAAAAGACGTCGATCTGTACAAAATTGAGCCCTGGGATCTCCAAGgtaagaagta--cattaattctgaaacaagtat--atatatacatacatag--ctgctgctaaatagacacatgcattttggaatgggcatgcag

upper sequence: LOC_Os02g42970.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G315140_T01 (Zea mays), 5'ss of exon 2
GTCGATTACTACCTGAGGAAGAAGGTGGCATCGAAGAAAATCGACCTCGACGTTATAAAAGACGTCGACCTGTACAAAATCGAGCCCTGGGATCTCCAAGgtaattagcatgcatgcaagttgatcgaagaatcaaaaaaatcaaagttag--gtttgcgattgaattgagcatcca-acatgtacaaatattgcag----------------------------------------------------
||||| ||||||||||||||||||||||| || || || |||||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||||||||| ||  |  |   |         | | |  | |  |   |||   |||| |  ||   | |||  ||   ||||  | ||| || |   || |  |                                                     
GTCGACTACTACCTGAGGAAGAAGGTGGCGTCCAACAAGATCGACCTTGACGTCATAAAAGACGTCGATCTGTACAAAATTGAGCCTTGGGATCTCCAAGgcaagaaataaatacattccgaaagcaagtagttgatgcaat-ggagttggtagtagacaattacat---gcatatatacacgtgctgctaattaaatattagactcacaatgatcaattggcatcacacatgcatttggaatgggcag

upper sequence: LOC_Os02g42970.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA11G03340.1 (Glycine max), 5'ss of exon 1
GTCGATTACTACCTGAGGAAGAAGGTGGCATCGAAGAAAATCGACCTCGACGTTATAAAAGACGTCGACCTGTACAAAATCGAGCCCTGGGATCTCCAAGgtaattagcatgcatg---caagttga--tcgaagaatcaaaaa---aatcaaagttaggtttgcgattgaattgagcatccaacatgtacaaatattgcag-----------
|| |||||||| || ||||| ||||| || || || |  || || || ||  | |||||||| ||||| || || ||||||||||| |||||||| |||||||  ||  ||  ||    | || |    ||  |  || ||      ||| | |  ||  | |   ||  |    || |     ||  |     |||| | |           
GTTGATTACTATCTTAGGAAAAAGGTAGCTTCTAAAAGGATTGATCTAGATATCATAAAAGATGTCGATCTCTATAAAATCGAGCCATGGGATCTTCAAGgtacgtatgatatataagcctagctagcttcttatgattaagtctccaattagaaatacatatat-ataaaccacagtactgctcacatttgtttatttctgatgatatatag

upper sequence: LOC_Os02g42970.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S1_447V6.1 (Physcomitrella patens), 5'ss of exon 1
---GTCGATTACTACCTGAGGAAGAAGGTGGCATCGAAGAAAATCGACCTCGACGTTATAAAAGACGTCGACCTGTACAAAATCGAGCCCTGGGATCTCCAAGgtaa---ttagcatgcatgcaagttgatcgaagaatcaaa--aaaatcaaagttaggtttgcgattgaattgagcatccaac---atgtacaaatattgcag------------------------------------------------------------------------------------
   || |  || ||| ||      || |||| |       | |  ||||   |  | ||  | ||  | ||||| ||||||||||||||||||||||||||||||||   |      | || |  | ||  | | | || | |  | | |  ||   | ||   |   ||  | |     |||      | ||  || |||| |                                                                                     
CTGGTTGGGTATTACTTGCACGGCAAAGTGGGAAGATCTCAGAGAGACC---AGCTCATTCAGGAGTTGGACCTCTACAAAATCGAGCCCTGGGATCTCCAAGgtaagaatcgatcagaatcctcggtgtactatgtatgacaccagactagaaaacacgtcctcacatgcttcgttgccccatttcagtctattaagattgaactcatggtgtgttcgagccctgggattgcaattagattccatgtccactacgtacacggacaagtaaccccgatgtggtcatcag

upper sequence: LOC_Os02g42970.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S182_37V6.1 (Physcomitrella patens), 5'ss of exon 1
---GTCGATTACTACCTGAGGAAGAAGGTGGCATCGAAGAAAATCGACCTCGACGTTATAAAAGACGTCGACCTGTACAAAATCGAGCCCTGGGATCTCCAAGgtaattagcatg--catgcaagttg-atcgaagaatcaaaaaaatcaaagttaggtttgcgattgaattgagcatccaacat-gtacaaat-attgcag----------------------------------------------------------------------------------------------
   ||||  |||||| ||      |||||||    |    |    ||||   |  | ||  | ||  | ||||| |||||||||||||||||||| ||||| |||||  | |     | || | || | || |   | |    ||  ||    |   ||||       || | | |||  || |  |||| |   |||| |                                                                                               
CTAGTCGGGTACTACTTGCACGGCAAGGTGGGGAGGTTTCAGCGAGACC---AGCTCATTCAGGAGTTGGACCTTTACAAAATCGAGCCCTGGGACCTCCATGgtaagcatcggaatcctgaaggtagtatggtgcagtgttcaacctcctcatctagtttcgtcaaaaaataaacatttaaaacagtactatccattgaattgtgatcaacataagctcaagagcatgttctcctcatctattgatagcatgaaatggtccagcagtattgacaaaaacttgttgcaccgatcag