1 5' 3' | 2 5' 3' | 3 5' 3' |
GTCCACCACCCGGACCGCGCCTACGACTTCCGCCGATACGTCGGCCCGGCGCTCGCCATGGTCAACCCCGCGCTCGTCCTCATCACCGGAGACCTCACCGgtacgggcgctcctctctctcggccccttacctttctgtgccgcttcgtttgatgttgtgatccttcccgggttttagggatgatccaatctggttttag...
species | Oryza sativa |
transcript | LOC_Os01g66920.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTCGCCATGGTCAACCCCGCGCTCGTCCTCATCACCGGAGAC-TCACCG ATGGAAAAAGCAAAGATCTGCTAACTATGAAGCAAAAGGAGATGGAGTGGAEST: gi|87009512|gb|CI309033.1|CI309033
genomic: GCTCGCCATGGTCAACCCCGCGCTCGTCCTCATCACCGGAGACCTCACCGgtacgggcgc ... ttttcttcagATGGAAAAAGCAAAGATCTGCTAACTATGAAGCAAAACGAGATGGAGTGGA
EST: GCTCGCCATGGTCAACCCCGCGCTCGTCCTCATCACCGGAGACCTCACCG ATGGAAAAAGCAAAGATCTGCTAACTATGAAGCAAAACGAGATGGAGTGGAEST: gi|88313147|gb|CI594777.1|CI594777
genomic: GCTCGCCATGGTCAACCCCGCGCTCGTCCTCATCACCGGAGACCTCACCGgtacgggcgc ... ttttcttcagATGGAAAAAGCAAAGATCTGCTAACTATGAAGCAAAACGAGATGGAGTGGA
EST: GCTCGCCATGGTCAACCCCGCGCTCGTCCTCATCACCGGAGACCTCACCG ATGGAAAAAGCAAAGATCTGCTAACTATGAAGCAAAACGAGATGGAGTGGA
genomic: GCTCGCCATGGTCAACCCCGCGCTCGTCCTCATCACCGGAGACCTCACCGgtacgggcgc ... ttttcttcagATGGAAAAAGCAAAGATCTGCTAACTATGAAGCAAAACGAGATGGAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCACCACCCGGACCGCGCCTACGACTTCCGCCGATACGTCGGCCCGGCGCTCGCCATGGTCAACCCCGCGCTCGTCCTCATCACCGGAGACCTCACCGgtacgggcgctcctctctctcggccccttacctttctgtgccgcttcgtttgatgttgtgatccttcccgggttttagggatgatccaatctggttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc