1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGCGCTGGAGTTCACGCCGACGTGGATCGTCGCGGCGATCTGCTCCCTCATCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGgtaaaccaaaaccatctccccggccggccggccaaccatgccgatcgaggcgtacgtttttttttgctttgttgcccatctcaatctctcttcctcggattaatgcgctatggcgttgctcgctgcgatggcag
species | Oryza sativa |
transcript | LOC_Os01g66510.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAG ACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGEST: gi|88444125|gb|CI594498.1|CI594498
genomic: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGgtaaaccaaa ... gcgatggcagACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTG
EST: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAG ACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGEST: gi|88421047|gb|CI566888.1|CI566888
genomic: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGgtaaaccaaa ... gcgatggcagACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTG
EST: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAG ACGCTCAAGAGAAAGAAACAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGEST: gi|88441321|gb|CI602092.1|CI602092
genomic: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGgtaaaccaaa ... gcgatggcagACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTG
EST: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGGAAG ACGCTCAAGAGAAAGAACEST: gi|88314130|gb|CI602462.1|CI602462
genomic: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGgtaaaccaaa ... gcgatggcagACGCTCAAGAGAAAGAAC
EST: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAG ACGCTCAAGAGAAAGAAACAGAAGGGGCTATTCGAGGCTCTACTCAAGGTGEST: gi|88398045|gb|CI585548.1|CI585548
genomic: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGgtaaaccaaa ... gcgatggcagACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTG
EST: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAG ACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTG
genomic: TCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGgtaaaccaaa ... gcgatggcagACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCTGGAGTTCACGCCGACGTGGATCGTCGCGGCGATCTGCTCCCTCATCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGgtaaaccaaaaccatctccccggccggccggccaaccatgccgatcgaggcgtacgtttttttttgctttgttgcccatctcaatctctcttcctcggattaatgcgctatggcgttgctcgctgcgatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG