1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTCGCCGCGGCGCCGGCCTCCTCCTCCTCCTGCACCACCCACCGCCGGCGCAGCGGCCTTCCCGCCATCTCCGCGTCCCTCGCAACCGCCTCCTCCACTGgtaaaaccaaccgccctgctgttactactctctctctcctccagttttcctccattttcgccctaatctgacctgcatctgggcctcccgcatgtccag
species | Oryza sativa |
transcript | LOC_Os01g43390.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGCCGCCTTCCCGCCATCTCCGCGTCCCTCGCAACCGCCTCCTCCACTG AGGAGCCGCTGCTGGTGCGGGCGGCGAGGGGCGAGGACGGGCTGCCGCGGCEST: gi|88387768|gb|CI587856.1|CI587856
genomic: CAGCGGCCTTCCCGCCATCTCCGCGTCCCTCGCAACCGCCTCCTCCACTGgtaaaaccaa ... gcatgtccagAGGAGCCGCTGCTGGTGCGGGCGGCGAGGGGCGAGGACGGGCTGCCGCGGC
EST: CAGCGGCCTTCCCGCCATCTCCGTGTCCCTCGCAACCGCCTCCTCCATTG AGGAGCCGCTGTTGGTGCGGGCGGCGAGGGGCGAGGACGGGCTGCCGCGGAEST: gi|88722641|gb|CI746151.1|CI746151
genomic: CAGCGGCCTTCCCGCCATCTCCGCGTCCCTCGCAACCGCCTCCTCCACTGgtaaaaccaa ... gcatgtccagAGGAGCCGCTGCTGGTGCGGGCGGCGAGGGGCGAGGACGGGCTGCCGCGGC
EST: CAGCGGCCTTCCCGCCATCTCCGCGTCCCTCGCAACCGCCTCCTCCACTG AGGAGCCGCTGCTGGTGCGGGCGGCGAGGGGCGAGGACGGGCTGCCGCGGCEST: gi|86595710|gb|CI288403.1|CI288403
genomic: CAGCGGCCTTCCCGCCATCTCCGCGTCCCTCGCAACCGCCTCCTCCACTGgtaaaaccaa ... gcatgtccagAGGAGCCGCTGCTGGTGCGGGCGGCGAGGGGCGAGGACGGGCTGCCGCGGC
EST: CAGCGGCCTTCCCGCCATCTCCGCGTCCCTCGCAACCGCCTCCTCCACTG AGGAGCCGCTGCTGGTGCGGGCGGCGAGGGGCGAGGACGGGCTGCCGCGGC
genomic: CAGCGGCCTTCCCGCCATCTCCGCGTCCCTCGCAACCGCCTCCTCCACTGgtaaaaccaa ... gcatgtccagAGGAGCCGCTGCTGGTGCGGGCGGCGAGGGGCGAGGACGGGCTGCCGCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGCCGCGGCGCCGGCCTCCTCCTCCTCCTGCACCACCCACCGCCGGCGCAGCGGCCTTCCCGCCATCTCCGCGTCCCTCGCAACCGCCTCCTCCACTGgtaaaaccaaccgccctgctgttactactctctctctcctccagttttcctccattttcgccctaatctgacctgcatctgggcctcccgcatgtccag
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