1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGGAGTAACCGAGGAAGGGATCCCGCGAAGCAGTAGCATAGCAGCGGAAGAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctccctccgctcccttcccttcccttgccccgcctggccggaaggttcttgatttctctatttttaacctcaaggagttggtttgcttgggga...
species | Oryza sativa |
transcript | LOC_Os01g22870.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|38472061|gb|CF956192.1|CF956192
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|33680657|gb|CF308896.1|CF308896
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|88315649|gb|CI615521.1|CI615521
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGGGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|29678098|gb|CB674373.1|CB674373
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: CTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|11544405|gb|BF475223.1|BF475223
genomic: CTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAGGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGCTTCTTCCATGTCCTCEST: gi|66913390|gb|CX100238.1|CX100238
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAGGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGCTTCTTCCATGTCCTCEST: gi|163925698|gb|EG714534.1|EG714534
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: CGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|88692086|gb|CI735661.1|CI735661
genomic: CGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|88417344|gb|CI579005.1|CI579005
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|44679016|gb|CR292450.1|CR292450
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAGGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGCTTCTTCCATGTCCTCEST: gi|88400723|gb|CI596144.1|CI596144
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|25806557|gb|CA762518.1|CA762518
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAGGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGCTTCTTCCATGTCCTCEST: gi|27920913|gb|CB096721.1|CB096721
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAGGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGCTTCTTCCATGTCCTCEST: gi|88693063|gb|CI736638.1|CI736638
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|86891022|gb|CI305874.1|CI305874
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCEST: gi|218478253|gb|FG951116.1|FG951116
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
EST: GAACTCAAGCGGAGTGGGCGAGGAAGCAAAGCCCGATGGATCAACACCAG GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGCTTCTTCCATGTCCTC
genomic: GAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctc ... gttgctgcagGTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGAGTAACCGAGGAAGGGATCCCGCGAAGCAGTAGCATAGCAGCGGAAGAACTCAAGCGGAGTGGGCGAAGAAGCAAAGCCCGATGGATCAACACCAGgtgatagctccctccgctcccttcccttcccttgccccgcctggccggaaggttcttgatttctctatttttaacctcaaggagttggtttgcttgggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccgcc