1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaacttttcattttaacatcgcaatatttggtttgatacttttggatctgaactctgacaagcaggctattttatcttacag
species | Glycine max |
transcript | GLYMA20G23080.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|254340600|gb|GR850902.1|GR850902
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|31469544|gb|CD411572.1|CD411572
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|13790097|gb|BG652688.1|BG652688
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTEST: gi|31311102|gb|CD396305.1|CD396305
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATT
EST: GGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|7147510|gb|AW509432.1|AW509432
genomic: GGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: CTATATGTNTTTCCC-AACTTGAAGTACGTGGGCATTGAATTGGTGG-AG GTGAAATCTGGTACTTTGGTTGACAATGGCTTAATTACEST: gi|6094883|gb|AW119550.1|AW119550
genomic: CTATATGT-TTTCCCCAACTTGAAGTACGTGGGCATTGAATTG-TGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTAC
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|58021776|gb|CX708517.1|CX708517
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|213596806|gb|DB978038.1|DB978038
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|192307920|gb|FK003068.1|FK003068
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|26268307|gb|CA819370.1|CA819370
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|254340601|gb|GR850903.1|GR850903
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|209711758|gb|BW678940.1|BW678940
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: CCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|5606713|gb|AI900811.1|AI900811
genomic: CCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGGTTGACAATGTCTTAATTEST: gi|208042272|gb|GD839550.1|GD839550
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATT
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|208301469|gb|GE099861.1|GE099861
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|16997164|gb|BM086536.1|BM086536
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|6915349|gb|AW396879.1|AW396879
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|5126765|gb|AI748501.1|AI748501
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|193382511|gb|FK345778.1|FK345778
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: CATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|18040353|gb|BM308647.1|BM308647
genomic: CATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|254332430|gb|GR843907.1|GR843907
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|207842657|gb|GD815965.1|GD815965
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|209719567|gb|BW651019.1|BW651019
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|193622041|gb|FK570453.1|FK570453
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: CAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGCACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|19934771|gb|BQ079801.1|BQ079801
genomic: CAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|208317285|gb|GE117494.1|GE117494
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|208091443|gb|GD886338.1|GD886338
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTATGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|193325608|gb|FK288442.1|FK288442
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: CATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|192307919|gb|FK003067.1|FK003067
genomic: CATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|254348789|gb|GR852468.1|GR852468
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|26047705|gb|CA784416.1|CA784416
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|26045988|gb|CA783372.1|CA783372
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGGAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAAEST: gi|15203979|gb|BI426756.1|BI426756
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
EST: ACCTATATGTTTTCCCCAACTTAAAGTACGTGGGCATTGAATTGTGGCAG GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
genomic: ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAGgtaaacttttcattttaacatcgcaatatttggtttgatacttttggatctgaactctgacaagcaggctattttatcttacag
- - - - - - - - - - - - - - - - - - - TTGAAG