1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatttctcgtccataattttctgaattataattagatacatcataatgcatcgaagtgtttgtactattcctatttttaattgacaattgaatt...
species | Glycine max |
transcript | GLYMA20G22090.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|27425907|gb|CA937427.1|CA937427
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|58021081|gb|CX707823.1|CX707823
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|193520423|gb|FK475488.1|FK475488
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGAEST: gi|207830206|gb|GD804614.1|GD804614
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGA
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|20813000|gb|BQ297478.1|BQ297478
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|193610165|gb|FK565729.1|FK565729
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCAEST: gi|6482099|gb|AW201370.1|AW201370
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCA
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|208131621|gb|GD926852.1|GD926852
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|15286594|gb|BI470485.1|BI470485
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCANGCCAACAAAATAACGGAGEST: gi|19453133|gb|BM954543.1|BM954543
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|31473744|gb|CD415772.1|CD415772
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|58017825|gb|CX704567.1|CX704567
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|31460889|gb|CD402917.1|CD402917
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|31561461|gb|CD487299.1|CD487299
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|13790301|gb|BG652892.1|BG652892
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|209729517|gb|BW651857.1|BW651857
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: CCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAGEST: gi|192294162|gb|FG986251.1|FG986251
genomic: CCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG GGAAACATTGCAAATGTGATCAGTACCATTCACGCCAACAAAATAAC
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAACATTGCAAATGTGATCAGTACCATTCAGGCCAACAAAATAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatttctcgtccataattttctgaattataattagatacatcataatgcatcgaagtgtttgtactattcctatttttaattgacaattgaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG