1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttgcag
species | Glycine max |
transcript | GLYMA18G02210.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CATTCCACCCAGTTGCTACCATTCTTAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|17021583|gb|BM092617.1|BM092617
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|9900642|gb|BE609610.1|BE609610
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: TTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGGCTCCT-TGEST: gi|193529719|gb|FK483986.1|FK483986
genomic: TTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGG-CTCCTCTG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|7327134|gb|AW620996.1|AW620996
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|208231045|gb|GE033444.1|GE033444
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCEST: gi|6200949|gb|AW153049.1|AW153049
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGC
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|193430848|gb|FK393682.1|FK393682
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGEST: gi|5753617|gb|AI960904.1|AI960904
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|6070479|gb|AW099866.1|AW099866
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|6725970|gb|AW310369.1|AW310369
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|207779965|gb|GD753986.1|GD753986
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTTAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|208315496|gb|GE116190.1|GE116190
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|208298017|gb|GE092364.1|GE092364
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGCGCAATGEST: gi|22931962|gb|BU549101.1|BU549101
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|4299061|gb|AI442850.1|AI442850
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|209697827|gb|BW670083.1|BW670083
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|208190804|gb|GD991424.1|GD991424
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: TACCATTCTCAGTCTTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|213592630|gb|DB979421.1|DB979421
genomic: TACCATTCTCAG-C-TATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGEST: gi|193686704|gb|FK626097.1|FK626097
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: TTCCACCCAGTTGGCTACCCATTCTCAGCTATCTGACCAAGGCTCCTCTG GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: TTCCACCCAGTT-GCTA-CCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttgcag
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- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC