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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacattttcaaaaactaggcaatttataatttatcttgtacttttgatcatcaatttatcaaggatttcattattctgctagtatacttattggt...

Basic information

species Glycine max
transcript GLYMA16G01810.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os06g09290.1 (Oryza sativa), 5'ss of exon 6
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgta-----cggacattttcaaaaactagg---caatttataatttatcttgtacttttgatcatcaatttatcaaggatttcattattctgctagtatacttattggt--------------
||| |  |||| ||||| |||||||| |||||  | ||||||||||||||  |||| ||||| ||||| || || ||||| || ||||| || ||||||||||     |||  ||| |   |    ||    || | | |   |  | |  |  |     ||||  || | | |     ||  || ||   |  || |   |||| ||              
GAGGGCCGGACCCAGATCTTCAAGATCCACACTCGCACCATGAACTGCGAGCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccgggaattcttgcatgacagaatccagtctctggctagtttc-tgttccatgtcatttatctttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacag

upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacgg-acattttcaaaaactaggcaatttataatttatcttgtacttttgatcatcaat-ttatcaaggatttcattattctgctagtatacttattggt-------
|||||||| || |||||||| ||||| ||||| |||||||||||||| || ||||||||||| ||||||||| ||||||| ||||||||||| || |||||||    || | |   ||    | |   | | |  | ||   |  | |  || |  |   | ||||   || || | |  || | ||  ||| ||| ||          
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatacttatctgaagggcacgttgtct-ttgtatactctccattgatggttttggctgttattttgggtt-cttggtttttctcatattctttttccacattcag

upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 9
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacattttcaaaaactaggcaatttataatttatcttgtacttttgatcatcaatttatcaaggatttcattattctgctagtatacttattggt
|| || || |||||||| |||||||| ||||| |||||||||||||||||  | || |||||||| ||  | || || ||  | |||||||| || || |||| |     ||        ||  |  |  ||  |||    |   || | | | | |||  | |       || | | ||  |                 
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCGCGCTTATGCCCAAACTCGACCGgtaag-----ttctcgtgcttatacggtagatggttttctctcctctctcggtaaccaagctttggtttgcttgaatctttag-----------------

upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 9
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacattttcaaaaactaggcaatttataatttatcttgtacttttgatcatcaatttatcaaggatttcattattctgctagtatacttattggt
|| || || |||||||| |||||||| ||||| |||||||||||||||||  | || |||||||| ||  | || |||||  | |||||||| || || |||| |     ||        ||  |  |  ||  |||    |   || | | | | ||   | |       || | | ||  |                 
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCTCGCTTATGCCCAAACTCGACCGgtaag-----ttctcgtgcttatacggtagatggttttctctcctctctcggtaaccacgctttggtttgcttgaatctttag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320082|gb|GR830998.1|GR830998
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|207710520|gb|GD690756.1|GD690756
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|214005791|gb|DB988688.1|DB988688
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|26269017|gb|CA820080.1|CA820080
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAATGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|6847793|gb|AW350083.1|AW350083
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|4437003|gb|AI522868.1|AI522868
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|208149915|gb|GD944223.1|GD944223
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|8827828|gb|BE211558.1|BE211558
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCATG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|18039872|gb|BM308166.1|BM308166
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACA
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACA
EST: gi|26269018|gb|CA820081.1|CA820081
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|214007684|gb|DB986050.1|DB986050
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|19268833|gb|BM885089.1|BM885089
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|18715759|gb|BM522851.1|BM522851
EST:     GGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: GGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|7327123|gb|AW620985.1|AW620985
EST:     TTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: TTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|298174191|gb|HO017527.1|HO017527
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAGATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|208156494|gb|GD956818.1|GD956818
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|33390699|gb|CA853894.1|CA853894
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|254319816|gb|GR829220.1|GR829220
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|193648414|gb|FK597105.1|FK597105
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|8286217|gb|BE023776.1|BE023776
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|298171740|gb|HO021332.1|HO021332
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|209717051|gb|BW668705.1|BW668705
EST:     AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacggacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG