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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctaaaattttatctactttcagacaattggtttttcagatgattaaaatgtaattagcatgtaaacattcctggacattctaacacttcgaaattgtgtag

Basic information

species Glycine max
transcript GLYMA15G09090.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G09090.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 9
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtc----taaaattttatctactttcagacaattggtttttcagatgattaaaatgt----aattagcatgtaaacattcctggacattctaacacttcgaaattgtgtag--------------------------------------------------------------------------
|| ||||| ||||| || || |||||| |||| || ||||| || || || |  || ||||||||||||||||||||||| ||||| |||||||||||     || ||| ||||| |  || || ||  |      |||  |  ||| | | |     |  |  ||| |||  |  |||| |    |  || |   | ||| || |                                                                           
GTTCTTGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGgtaagcatacaatcttatccatgttgagtcatatatcacgtcatctt-ttatagtttcctggacaactatgaaaatgtagctgggctcatttccaataatagattctggacaccagatagctttacaatgcaatgtataaataaggaggtgcatacaggtactgatttttctaacttctgcgtag

upper sequence: GLYMA15G09090.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgt-ctaaaatttta---tctactttcagaca-attggtttttcagatgattaaaatgtaattagcatgtaaacat-tcctggacattctaaca--cttcgaaattgtgtag-----------------------------------------------------------------------------------------
|| ||||| || || || || |||||  |||| || ||||||||||| || | ||| || |||||||| |||||||| || || ||||||||||||||  | | || |||     |  ||     || ||   || | ||  | |     | ||| |     |||| || | |  |  ||| || || |   ||  |||  | |  |                                                                                         
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag

upper sequence: GLYMA15G09090.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctaaaattttatctactttcagaca-attggtttttcagatgattaaaatgtaattagcatgtaaacattcctggacattctaacacttcgaaattgtgtag
|| ||||| ||||| |||||||| ||| | || |||||||||||  ||||||  || || ||||||||||||||||| ||||| || ||||||||||| ||   | || |||  |||   |    ||  | |||||| |  ||         ||  ||  | |||     ||  |||  | ||  || |   | |     
GTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTACACAGATTTCAGGTTTCCACAGATAAAGGCACATCCCTGGCACAAGgt-tagtgtcttttctctttttgcatgtgttcttgtttcagtttctt-------tcttcacacatcaac-----tgatcataattacgttttggtttag-----

upper sequence: GLYMA15G09090.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctaaaattttatctactttcagacaattg--gtttt-tcagatgattaaaatgtaattagcat--gtaaacattcctggacattctaacact-tcgaaattgtgtag
|| ||||| ||||| || || || ||| | |||||||||||||| | ||| | ||| ||||||||||||||||||||||||||||| ||||||||||| |  | |||||| || || |     ||||  ||||| |||| | || | ||  ||  |   |   || || |     | | ||  | | | | || | |        
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgca-ttttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaacgtagatcattatattatctata--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208236435|gb|GE031587.1|GE031587
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctaaaatt ... aattgtgtagATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
EST: gi|208223838|gb|GE023963.1|GE023963
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGAATGCCTCCAGAAGCAATTGATCTTGCAT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctaaaatt ... aattgtgtagATATTCCACAAAAAGA-TGCCTCCAGAAGCAATTGATCTTGCAT
EST: gi|254330723|gb|GR841988.1|GR841988
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctaaaatt ... aattgtgtagATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
EST: gi|254329846|gb|GR839399.1|GR839399
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctaaaatt ... aattgtgtagATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
EST: gi|23731206|gb|BU763715.1|BU763715
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctaaaatt ... aattgtgtagATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
EST: gi|12774190|gb|BG239117.1|BG239117
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctaaaatt ... aattgtgtagATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT