1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATGAACAGTTTTCAAGGCTGAGAGTTACTGCGGCCACCCTCTCTGAACTCTCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAGgttcatttctggacctaaatgcaagaattttattatttctgtacatttttgctgactgaataatagaaatctaaagagaaaatgaaaatcagataaaagg...
species | Glycine max |
transcript | GLYMA11G18710.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAG GCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAEST: gi|58023069|gb|CX709810.1|CX709810
genomic: TCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAGgttcatttct ... cattctgcagGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGA
EST: ATTTCTAGAGAAGACT-GTGGGCTTGG-TGATGGAAG GCATTTTGTCAATGAAGCGGCTA-TGTTCAGAAGTGTGAAATTAATTGCTGEST: gi|21993710|gb|BQ785238.1|BQ785238
genomic: ATTTCTAGAGAAGACTGGT-GGCTTGGTTGATGGAAGgttcatttct ... cattctgcagGCATTTTGTCAATGAAGCGGCTATTG-TCAGAAGTGTGAAATTAATTGCTG
EST: TCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAG GCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAEST: gi|10848066|gb|BF070623.1|BF070623
genomic: TCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAGgttcatttct ... cattctgcagGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGA
EST: AGAAGACTGGTGGCTTGGTTGATGGAAG GCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAEST: gi|33388989|gb|CA852196.1|CA852196
genomic: AGAAGACTGGTGGCTTGGTTGATGGAAGgttcatttct ... cattctgcagGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGA
EST: TCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAG GCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAEST: gi|254343175|gb|GR859337.1|GR859337
genomic: TCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAGgttcatttct ... cattctgcagGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGA
EST: TCTACAGCA-CTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAG GCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAEST: gi|57574504|gb|CX547479.1|CX547479
genomic: TCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAGgttcatttct ... cattctgcagGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGA
EST: TAGAGAAGACT-GTGGCTTGGTTGATGGAAG GCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAEST: gi|151406228|gb|EV276043.1|EV276043
genomic: TAGAGAAGACTGGTGGCTTGGTTGATGGAAGgttcatttct ... cattctgcagGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGA
EST: TCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAG GCATTTTGTCGATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGA
genomic: TCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAGgttcatttct ... cattctgcagGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAACAGTTTTCAAGGCTGAGAGTTACTGCGGCCACCCTCTCTGAACTCTCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAGgttcatttctggacctaaatgcaagaattttattatttctgtacatttttgctgactgaataatagaaatctaaagagaaaatgaaaatcagataaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatga