1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttaccttcaactgttattagtttggaagaagcaacaaaaagataggggacttgaaaccttttataggctttaatgatgatttaaaattgacattcttttatgcctttggtttattcttggagtatgagaaataactgaaaatatttctataacaatttgcatgacacttgatcccgtag
species | Glycine max |
transcript | GLYMA10G42940.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATATEST: gi|16278890|gb|BI943147.1|BI943147
genomic: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccgtagGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATAT
EST: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATGCTGGATATEST: gi|16283207|gb|BI945427.1|BI945427
genomic: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccgtagGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATAT
EST: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATATEST: gi|16278507|gb|BI942940.1|BI942940
genomic: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccgtagGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATAT
EST: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATAT
genomic: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccgtagGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttaccttcaactgttattagtttggaagaagcaacaaaaagataggggacttgaaaccttttataggctttaatgatgatttaaaattgacattcttttatgcctttggtttattcttggagtatgagaaataactgaaaatatttctataacaatttgcatgacacttgatcccgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT