1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattatatatgtttattttcatggatataggtgtaatttttgtctgctgttacaaaccagtatcatgctgcttaatttactaataatgtgtag
species | Glycine max |
transcript | GLYMA10G32480.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAG GTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGEST: gi|6726786|gb|AW311140.1|AW311140
genomic: CTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattata ... taatgtgtagGTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAG
EST: CTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAG GTTGACAACCAAACTCAACCTTNCTCAAAATCAGGCCCATGGAGAAAGEST: gi|13311690|gb|BG405341.1|BG405341
genomic: CTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattata ... taatgtgtagGTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAG
EST: CTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAG GTTGACAACCAAACTCAACCTTNCTCAAAATCAGGCCCATGGAGAAAG
genomic: CTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattata ... taatgtgtagGTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGgtatattatatatgtttattttcatggatataggtgtaatttttgtctgctgttacaaaccagtatcatgctgcttaatttactaataatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA