1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGGAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAAgtaatttcttgtaagtttgaataattaagtaactaatgtgaaaaactgaactaaactgtggttatatgcag
species | Glycine max |
transcript | GLYMA08G11980.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAA AATATTTTGTTCAACAGGAGAAACTTCAAATGTTGATGATGACCTCTGGCTEST: gi|208105637|gb|GD904690.1|GD904690
genomic: ACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAAgtaatttctt ... ttatatgcagAATATTTTGTTCAACAGGAGAAACTTCAAATGTTGATGATGACCTCTGGCT
EST: ACTTGGAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAA AATATTTTGTTCAACAGGAGAAACEST: gi|58018254|gb|CX704996.1|CX704996
genomic: ACTTGGAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAAgtaatttctt ... ttatatgcagAATATTTTGTTCAACAGGAGAAAC
EST: ACTTGAAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAAT-AA AGTAATTTCTT------GAGAAACTTCAAATGTTGATGATGACCTCTGGCTEST: gi|192295038|gb|FG986757.1|FG986757
genomic: ACTTGGAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAAgtaatttctt ... ttatatgcagAATATTTTGTTCAACAGGAGAAACTTCAAATGTTGATGATGACCTCTGGCT
EST: ACTTGGAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAA AATATTTTGTTCAACAGGAGAAACTTCAAATGTTGATGATGACCTCCGGCT
genomic: ACTTGGAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAAgtaatttctt ... ttatatgcagAATATTTTGTTCAACAGGAGAAACTTCAAATGTTGATGATGACCTCTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGGAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAAgtaatttcttgtaagtttgaataattaagtaactaatgtgaaaaactgaactaaactgtggttatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG