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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTGCAGGCTAAGAAAGACAGGTTAAGGATGTGGACAAACTATGTACCACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaatattgctcaatcatttatttatgccaaacagtcagtcttcattcatataaacatatcacattttaacttgagttttacag

Basic information

species Glycine max
transcript GLYMA06G17050.4
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 8
GGAGCTGCAGGCTAAGAAAGACAGGTTAAGGATGTGGACAAACTATGTACCACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaatattgctcaatcatttatttatgccaaacagtcagtctt--cattcatataaacatatcacattttaacttga---gttttacag-------
 || || || || |||||||| ||| ||||||| |||||||||||||| || ||  || |||||||||||||||| ||| ||||||||||| | || || |||| |  |  |      |  | ||||   | |  ||||    |   |   | |||   | ||    || || ||| |    | || | |       
TGAACTTCAAGCAAAGAAAGAGAGGCTAAGGATTTGGACAAACTATGTGCCCCCAGCTACAAATTCAAAGGCAATCCATGACCAGAATTTTACAGGAAAAgtaagtgcttttt--ctgtgaaattatttgacaaggtcatctctgttaactaaatacttaaatagtcttctatctttacacatcttcctgtctccag

upper sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
GGAGCTGCAGGCTAAGAAAGACAGGTTAAGGATGTGGACAAACTATGTACCACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaata-ttgctcaatcatttatttatgccaaacagtcagtcttcattcatataaacatatcacattttaacttgagttttacag-----------
 || || || || |||||  |  | || ||  | |||||||||||||| || || ||  ||||||| |||||||||||  ||||||||||| |||| || ||   || ||| ||||     |  ||| |  || |    |   || ||  ||  ||   || |  | ||| |  |   | | |              
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatc--ctatcttttataaatggaattttaccctaattttatgtccatctcatttggcctttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233337|gb|AW568684.1|AW568684
EST:     CACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAG                         GTGGTTGAGGTTGTGAGTGGAGATTGTATTGTTGTTGCTGATGATTCCATT
genomic: CACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaatattg ... agttttacagGTGGTTGAGGTTGTGAGTGGAGATTGTATTGTTGTTGCTGATGATTCCATT
EST: gi|207759067|gb|GD733510.1|GD733510
EST:     CACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAG                         GTGGTTGAGGTTGTGAGTGGAGATTGTATTGTTGTTGCTGATGATTCCAAA
genomic: CACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaatattg ... agttttacagGTGGTTGAGGTTGTGAGTGGAGATTGTATTGTTGTTGCTGATGATTCCA--
EST: gi|7233314|gb|AW568661.1|AW568661
EST:     CACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAG                         GTGGTTGAGGTTGTGAGTGGAGATTGTATTGTTGTTGCTGATGATTCCATT
genomic: CACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaatattg ... agttttacagGTGGTTGAGGTTGTGAGTGGAGATTGTATTGTTGTTGCTGATGATTCCATT