1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAGgtttgaagttttacatgttggatatccattctcttgttgataagccatcctccacttgttcatttattttttcagtacatatttttcag
species | Glycine max |
transcript | GLYMA05G23670.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAG GTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGEST: gi|254344956|gb|GR851439.1|GR851439
genomic: TGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAGgtttgaagtt ... tatttttcagGTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
EST: CAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAG GTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGEST: gi|58020847|gb|CX707589.1|CX707589
genomic: CAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAGgtttgaagtt ... tatttttcagGTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
EST: TGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAG GTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGEST: gi|254344955|gb|GR851438.1|GR851438
genomic: TGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAGgtttgaagtt ... tatttttcagGTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
EST: CAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAG GTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGEST: gi|208054657|gb|GD855732.1|GD855732
genomic: CAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAGgtttgaagtt ... tatttttcagGTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
EST: TGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAG GTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGEST: gi|58017189|gb|CX703931.1|CX703931
genomic: TGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAGgtttgaagtt ... tatttttcagGTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
EST: TGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAG GTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGEST: gi|58017359|gb|CX704101.1|CX704101
genomic: TGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAGgtttgaagtt ... tatttttcagGTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
EST: GCCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAG GTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGEST: gi|16349156|gb|BI974751.1|BI974751
genomic: G-CCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAGgtttgaagtt ... tatttttcagGTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
EST: TGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAG GTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
genomic: TGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAGgtttgaagtt ... tatttttcagGTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTGCCAACCATCAAGGAACTTGGTCGATCACGGATAGAAGTGAACGTTAAGgtttgaagttttacatgttggatatccattctcttgttgataagccatcctccacttgttcatttattttttcagtacatatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT