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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCTACTTGACAATGACACCTCTTGGATGATTCTTGCAAGCTCTGGAATTGGTTGTGTTATTGAGTTTTGGAAAATTGGTAAAGCCATGCGCATAGAGgtattttttgtgatctctagcttttcttttatatgtatatgttaaacatatttgataggtgtgctttttgaattttgaatataaaatagcatggttcctg...

Basic information

species Glycine max
transcript GLYMA04G38120.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38120.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0130g00170.t01 (Vitis vinifera), 5'ss of exon 9
TTATCTACTTGACAATGACACCTCTTGGATGATTCTTGCAAGCTCTGGAATTGGTTGTGTTATTGAGTTTTGGAAAATTGGTAAAGCCATGCGCATAGAGgtattttttgtgatctctagcttttcttttatatgtatatgttaaacatatttgata--ggtgtgctttttgaattttgaatataaaatagcatggttcctg
 ||| |||||||||||||||| || |||||||| |||||||| |||||| |||||||    ||||||||||||||||| || || ||||||| |||||||||||  ||||||||  |     ||    | || |   | || || |  |  |   |   ||  ||||| || |  |||   | ||   |||     ||  | 
CTATTTACTTGACAATGACACATCATGGATGATACTTGCAAGTTCTGGAGTTGGTTGCTGCATTGAGTTTTGGAAAATAGGAAAGGCCATGCACATAGAGgtataatttgtgattac--atattgggatcatttacttttggtagattttgtaactgttggcttgcttgtttatgttttcttgtagcctagagaaattttta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454963|gb|AW185646.1|AW185646
EST:     TTGGTTGTGTTATTGAGTTTTGGAAAATTGGTAAAGCCATGCGCATAGAG                         ATTGATAGGACAGGAAGGATACCTATGTTGAAGCTCCGCGATCGAGAATCA
genomic: TTGGTTGTGTTATTGAGTTTTGGAAAATTGGTAAAGCCATGCGCATAGAGgtattttttg ... tttttcccagATTGATAGGACAGGAAGGATACCTATGTTGAAGCTCCGCGATCGAGAATCA
EST: gi|254338248|gb|GR849773.1|GR849773
EST:     GTTATTGAGTTTTGGAAAATTGGTAAAGCCATGCGCATAGAG                         ATTGATAGGACAGGAAGGATACCTATGTTGAAGCTCCGCGATCGAGAATCA
genomic: GTTATTGAGTTTTGGAAAATTGGTAAAGCCATGCGCATAGAGgtattttttg ... tttttcccagATTGATAGGACAGGAAGGATACCTATGTTGAAGCTCCGCGATCGAGAATCA
EST: gi|192294280|gb|FG986369.1|FG986369
EST:     TTGGTTGTGTTATTGAGTTTTGGAAAATTGGTAAAGCCATGCGCATAGAG                         ATTGATAGGACAGGAAGGATACCTATGTTGAAGCTCCGCGATCGAGAATCA
genomic: TTGGTTGTGTTATTGAGTTTTGGAAAATTGGTAAAGCCATGCGCATAGAGgtattttttg ... tttttcccagATTGATAGGACAGGAAGGATACCTATGTTGAAGCTCCGCGATCGAGAATCA