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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACTGCAGGCTAAGAAAGACAGGTTAAGGATGTGGACAAACTATGTACCACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaataatgctcaattatttatttatgccaaatagtcagtcttcattcatataagcatataacattttaacttgagttttacag

Basic information

species Glycine max
transcript GLYMA04G38010.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 8
TGAACTGCAGGCTAAGAAAGACAGGTTAAGGATGTGGACAAACTATGTACCACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaataatgctcaattatttatttatgccaaatagtcagtctt--cattcatataagcatataacattttaacttga---gttttacag-------
|||||| || || |||||||| ||| ||||||| |||||||||||||| || ||  || |||||||||||||||| ||| ||||||||||| | || || |||| |  |  |    | |  | ||||   | |  ||||    |   |   | |||   | |||   || || ||| |    | || | |       
TGAACTTCAAGCAAAGAAAGAGAGGCTAAGGATTTGGACAAACTATGTGCCCCCAGCTACAAATTCAAAGGCAATCCATGACCAGAATTTTACAGGAAAAgtaagtgcttttt--ctgtgaaattatttgacaaggtcatctctgttaactaaatacttaaatagtcttctatctttacacatcttcctgtctccag

upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
TGAACTGCAGGCTAAGAAAGACAGGTTAAGGATGTGGACAAACTATGTACCACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaataat-gctcaattatttatttatgccaaatagtcagtcttcattcatataagcatataacattttaacttgagttttacag-----------
 ||||| || || |||||  |  | || ||  | |||||||||||||| || || ||  ||||||| |||||||||||  ||||||||||| |||| || ||   || | | ||||     |  ||| |  ||      |   || ||  ||  ||   ||    | ||| |  |   | | |              
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatc--ctatcttttataaatggaattttaccctaattttatgtccatctcatttggcctttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193525790|gb|FK478845.1|FK478845
EST:     CACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAG                         GTGGTTGAGGTTGTGAGTGGAGACTGTATTGTTGTTG
genomic: CACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaataatg ... agttttacagGTGGTTGAGGTTGTGAGTGGAGACTGTATTGTTGTTG