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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattgttatatcatcctgcatttttttatattctaagcttcagatgtggcatttctaagaaatccatggctcttctcgatttccattcaagcaat...

Basic information

species Glycine max
transcript GLYMA03G39530.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453054|gb|BM954464.1|BM954464
EST:     GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|192303326|gb|FG995620.1|FG995620
EST:     GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|37997277|gb|CF808866.1|CF808866
EST:     GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|192299933|gb|FG992146.1|FG992146
EST:     AAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: AAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|31311467|gb|CD396670.1|CD396670
EST:     GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|37996140|gb|CF807729.1|CF807729
EST:     GCATCATATCTAAACCTTCCTGANTTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGA-TTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|298184842|gb|HO030055.1|HO030055
EST:     GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|19269660|gb|BM885916.1|BM885916
EST:     GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|302141262|gb|HO212138.1|HO212138
EST:     GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|9987385|gb|BE661493.1|BE661493
EST:     GCATCATATCTNAACCTTTCTGAATCTACTTTCAAG                         GATCTTCGGAGAAAAGCTTTCTGTCACCCCGCACCGTTANTTTCCATGG
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAA-GCTTCCTGTCACCC-GCAC-GTTA-TTTCCATGG
EST: gi|58022852|gb|CX709593.1|CX709593
EST:     GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|58019780|gb|CX706522.1|CX706522
EST:     GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
EST: gi|18711075|gb|BM522558.1|BM522558
EST:     GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG                         GATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT
genomic: GCATCATATCTAAACCTTCCTGATTCTACTTTCAAGgtaaccattg ... gtatctgcagGATCTTCGGAGAAAGCTTCCTGTCACCCGCACGTTATTTCCATGGCATAAT