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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatatgaaatgaaatttgctaacctggctttcctaaacaacttattcctttcatcatttgttttctgcattagcaaaatctgatgtattgtaattatgacatcctttgatacaactcttccaattataagcacacttgattgcctgtctgcag

Basic information

species Glycine max
transcript GLYMA03G33360.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33360.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0035g00760.t01 (Vitis vinifera), 5'ss of exon 9
GTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatatgaaatgaaatttgctaacctggctttcctaaacaacttattcctttcatcatttgttttctgcattagcaaaatctgatgtattgtaattatgacatcctttgatacaactcttccaattataagcacacttgattgcctgtctgcag
|| ||||| |||||||| ||||| ||||| ||||||||||||||| |  |  |||  || |||||||||   |||||||||||  ||| |  ||         |   | |   | |    |   |  ||      |||  | |  | || | ||  || |||| ||||   |    ||  |  ||                                                     
GTAACTGCGAACATGAGAGGAAGTAGTGCGGAGGAAGTGGCTGAGCGGGTTTTGACCCAGCCATCATTATCTGGTTTGCAGgtcagatttagaaccctggcaacagccttttatgtttccag--atctagaaacctca--agtcatcttat-caaaaggaaaaactgaaagaaaaaaaaaaaaacc----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120492359|gb|EH220526.1|EH220526
EST:     AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG                         GGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGCGAAGGTAACACCA
genomic: AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatatg ... ctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA
EST: gi|10256425|gb|BE824191.1|BE824191
EST:     AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG                         GGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA
genomic: AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatatg ... ctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA
EST: gi|58017604|gb|CX704346.1|CX704346
EST:     AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG                         GGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA
genomic: AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatatg ... ctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA
EST: gi|51334857|gb|CO978723.1|CO978723
EST:     AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG                         GGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA
genomic: AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatatg ... ctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA
EST: gi|208125191|gb|GD924701.1|GD924701
EST:     AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGG-TTGCAG                         GGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA
genomic: AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatatg ... ctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA
EST: gi|58014287|gb|CX701029.1|CX701029
EST:     AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG                         GGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA
genomic: AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatatg ... ctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCATGATGGGAAGGTAACACCA