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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAgtaataagtccttgcaatttttgtgtgtgaataaagtccttgcattttaactagatgtagtttgtcattttagcagagtaaattacattgacttctgctg...

Basic information

species Glycine max
transcript GLYMA01G37490.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37490.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G117369_T03 (Zea mays), 5'ss of exon 10
GTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCC---GTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAgtaataagtccttgcaatttttgtgtgtgaataaagtccttgcattttaactagatgtagtttgtcattttagcagagtaaattacattgac--ttctgctg---
  | |  | ||  ||||||| |  | |||||| || ||    |||  | | || ||||| ||| |  |||| |||||||| ||||||||||| ||||||||||||   ||   |  |      |  | |  | || ||    |    |||     || || ||   |||| |     |   |     |||| |  ||||       
-CTATGCAACATTTGGAAGGAGTTCAAAATCCTTTACCTGCATCACCGTACAAATTTTACGTTCTAGTTGAAACAACAGGAAGTGATGAATCATCTGACAAgtaa---gttactatagaaacagaatattgacaatgtatagggcaattattactatttatttc--cattctgatttatctatccctattgtcaattctatcttag

upper sequence: GLYMA01G37490.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0023g02630.t01 (Vitis vinifera), 5'ss of exon 10
GTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCAT---TGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAgtaataagtccttgcaattt-----ttgtgtgtgaataaagtccttgcattttaa---ctagatgtagtttgtcattttagcagagtaaattacattgacttctgctg
 || | |||||  | ||||| || || || ||||| ||  | |   ||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||   | ||||| | ||     || | | |    | | |    |  ||| ||   || |||| | ||  | |||||       ||||||| |||  |||      
-TTCTGAATCATTTAGAAGGAGCCCGGAACCCATTACCTCCCTCGATGCATAACTTTTATGTTCTGATTGAGACAACAGGAAGTGATGAATCTTATGATAAgtaat--cttcttgccaattagtcattatttatctgcagaatgtgagtttttcaagttcttgatg-aattatttatttttattctataaatta-attatctttg----

upper sequence: GLYMA01G37490.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S6_281V6.1 (Physcomitrella patens), 5'ss of exon 11
GTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATT---GCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAgtaataagtcct-----tgcaattttt--gtgtgtgaataaagtccttgcattttaactagatgtagtttgtcattttagcagagtaaa-ttacattgacttctgctg
  | | |  ||  ||   ||  || || |||| |||||   ||    | | ||||||||| ||||||| ||||||||||||||| ||||| |   |||||||||   | |  |     ||  || ||   |||| ||      || |||   |       || || ||  ||   |||  |  |  || |  ||||| || |       
-CTCTGACCCATTTGCCTGGAACAAGAGATCCTTTGCCACAATCTGGGAAAAACTTTTATCTTTTGATAGAGACAACAGGCAGTAATGAAACCCATGACAAgtatggaattttcttcatgtgatgttgcagtgtatggcagtggtgcttaagtgccgttcag-tggagagtgaagtttcggatgtttagagctacat-gatta------