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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAAGACCTGAATCATGCGCgttagtgattttttatgttcatcttgttataaactttcttccaatagtgtttagcttctcttgattgatgttctggttagggaacttgtcatttttttcttaattttctcttgcgattttaactatttaagatttttgtattgatcag

Basic information

species Glycine max
transcript GLYMA01G35950.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 8
TTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAAGACCTGAATCATGCGCgttagtgattttttatgttcatcttgttataaactttcttccaatagtgtttagcttctcttgattgatgttctggttagggaacttgtcatttttttcttaattttctcttgcgattttaactatttaagatttttgtattgatcag
||||||| || || ||| |||| |||||||||||| | || || |||||  |||||||||||| ||||||||||||  |    |  ||||| || |||| || |||  || || | ||    | || |||    ||  | ||| |    |||    | |  || ||   ||       |    | ||  |     | | || ||||| | ||||  |  | |                          
TTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACAATCCTGAGTCCTGCGTgtaagtatttcttaaggtcacacctgatat----ttcatgccattgccattttcagtatagtgtttatggtggcaacaaaaataatttgcccccctctgttcatttttttttgctctcatcag-------------------------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 8
TTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAAGACCTGAATCATGCGCgttagtgatttt--ttatgttcatcttg--ttataaactttcttccaatagtgtttagcttctcttgattgatgttctggttagggaacttgtcatttttttcttaattttctcttgcgattttaactatttaagatttttgtattgatcag
| ||||| ||||| ||| ||||||| ||||||||||| || || ||||||||||| || |||  ||||||||||||  || |  | || ||||||||| ||||||||||| |  |||| |||||||||  ||  |   ||| |||   |  |||||   || | |  |||   ||  || |     |  || | ||| |||| |                                                
TATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTTGCCCAGAATCATGCACgttagtgattctagttat-ttcatcttgatttgcaggatttattc---tgttgttt---ttttttctattacagtagtgatacacaatattattattattttttggc---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208062489|gb|GD858117.1|GD858117
EST:     TTGCAAATCTTGGCTGAGATTGGATTTGTTAGAAGACCTGAATCATGCGC                         TGACTGGAATTCATTTTTGGAGCGATTTCTGCCCAGACAAATAGCAATGAC
genomic: TTGCAAATCTTGGCTGAGATTGGATTTGTTAGAAGACCTGAATCATGCGCgttagtgatt ... tattgatcagTGACTGGAATTCATTTTTGGAGCGATTTCTGCCCAGACAAATAGCAATGAC