1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAGgtatataactttttccctcttttcattattaaatatttttacaaaataatgataacttcttgttgcccaaattggtctttgcaaccttagctattttccatgttactcttttcatacttaggtgtctcaccagtgttactaatgtaccattttgcag
species | Glycine max |
transcript | GLYMA20G37330.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAG AGGAAGCTTGTACCGAATTCTTCATCGCTCTAATTATCAGATTGATGAGAAEST: gi|6566093|gb|AW233853.1|AW233853
genomic: GCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAGgtatataact ... cattttgcagAGGAAGCTTGTACCGAATTCTTCATCGCTCTAATTATCAGATTGATGAGAA
EST: GCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAG AGGAAGCTTGTACCGAATTCTTCATCGCTCTAATTATCAGATTGATGAGAAEST: gi|9564976|gb|BE474476.1|BE474476
genomic: GCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAGgtatataact ... cattttgcagAGGAAGCTTGTACCGAATTCTTCATCGCTCTAATTATCAGATTGATGAGAA
EST: GCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAG AGGAAGCTTGTACCGAATTCTTCATCGCTCTAATTATCAGATTGATGAGAA
genomic: GCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAGgtatataact ... cattttgcagAGGAAGCTTGTACCGAATTCTTCATCGCTCTAATTATCAGATTGATGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAGgtatataactttttccctcttttcattattaaatatttttacaaaataatgataacttcttgttgcccaaattggtctttgcaaccttagctattttccatgttactcttttcatacttaggtgtctcaccagtgttactaatgtaccattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT