1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGGGAACATTTATAGAGTTCCGTAGTGGGATGCTGAATGTGTCACCTATTGGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtattttggtttttatcacattctctagaattttcactatccatattgaaatgttaggcgtataattttatgctaaaagtttgcaatttaagttctca
species | Glycine max |
transcript | GLYMA18G46390.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|213618074|gb|DB963707.1|DB963707
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACGATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|213593867|gb|DB981335.1|DB981335
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATACAAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTTTCGATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|151402864|gb|EV272677.1|EV272677
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|192303883|gb|FG998235.1|FG998235
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|213617059|gb|DB961539.1|DB961539
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACGATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|16348803|gb|BI974398.1|BI974398
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|192298879|gb|FG987624.1|FG987624
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|213592632|gb|DB979423.1|DB979423
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTGGCGATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|22928887|gb|BU546026.1|BU546026
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATNNTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|192306997|gb|FG999988.1|FG999988
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGCTTGCEST: gi|197664690|gb|FD480363.1|FD480363
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACGATATACGCCCGAAAATGGTTTCTGTACEST: gi|13790673|gb|BG653264.1|BG653264
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTAC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|31469416|gb|CD411444.1|CD411444
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|192306982|gb|FG999987.1|FG999987
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGCTTGCEST: gi|192321031|gb|FK013519.1|FK013519
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|151394726|gb|EV264597.1|EV264597
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|192299912|gb|FG991786.1|FG991786
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|151402943|gb|EV272756.1|EV272756
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|31467953|gb|CD409981.1|CD409981
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCEST: gi|192303884|gb|FG998236.1|FG998236
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
EST: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
genomic: GGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtat ... taagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGAACATTTATAGAGTTCCGTAGTGGGATGCTGAATGTGTCACCTATTGGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAggttatgtattttggtttttatcacattctctagaattttcactatccatattgaaatgttaggcgtataattttatgctaaaagtttgcaatttaagttctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG