Sequence
atgc intronic sequence ATGC exonic sequenceAACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTAACACAATAAAGAAGATATTGGCACGCCAGgtatgctactgatacttgtttcaatctaacaagaagacatgaatgggaaataattatacctgttatgcatttggcag
Basic information
species | Glycine max |
transcript | GLYMA18G06500.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G06500.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g18590.1 (Oryza sativa), 5'ss of exon 8
AACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTAACACAATAAAGAAGATATTGGCACGCCAGgtatg----ctactgatacttgtttcaatctaacaagaagacatgaatgggaa-ataattatacctgttatgcatttggcag----------------------
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TGAGACAGAGATAAAAACACCAAGAATCCCAGTTATCTCCAATGTGGATGCATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctctacacaatattctctaaatctgaatttataatgcagctctctctactctcttgggcacaatgtcttctgtatgcctgactaattagagttacag
upper sequence: GLYMA18G06500.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G30200.1 (Arabidopsis thaliana), 5'ss of exon 8
AACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTAACACAATAAAGAAGATATTGGCACGCCAGgtatgctactgatacttgtttcaatctaacaagaagacatgaatgggaaataat---tatacctgttatgcatttggcag------
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AGCCACAGAGATCAGAAGTCCGAGGATCCCAGTGATCTCGAATGTCGATGCACAGCCTCATGCAGATCCAGACACGATCAAGAAGATACTTGCACGCCAGgtaataaatcaatactcagagaactatgtgaattatttctcttttggcgacgctatataaaaaaaagatgcaaatgttgactacag
upper sequence: GLYMA18G06500.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G30200.2 (Arabidopsis thaliana), 5'ss of exon 8
AACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTAACACAATAAAGAAGATATTGGCACGCCAGgtatgctactgatacttgtttcaatctaacaagaagacatgaatgggaaataattatacctgttatgcatttggcag
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AGCCACAGAGATCAGAAGTCCGAGGATCCCAGTGATCTCGAATGTCGATGCACAGCCTCATGCAGATCCAGACACGATCAAGAAGATACTTGCACGCCAGgtaataaatcaatactcagagaactatgtgaattatttctcttttggcgacg-ctatataaaaaaaag---------
upper sequence: GLYMA18G06500.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g07380.t01 (Vitis vinifera), 5'ss of exon 8
AACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTAACACAATAAAGAAGATATTGGCACGCCAGgtatgctactgatacttgtttcaatctaacaagaagacatgaatgggaaataattatacctgtta---tgcatttggcag
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AGCTACGGAAATCAGAACTCCAAGAATCCCAGTTATATCAAACGTTGATGCACAGCCACATGCAGATCCCGACACGATTAAGAAGATATTGGCGCGTCAAgtaagatacttgaacttgtgatcttctatcaggaataaaaaatggcatgctaattcaacaaatcaactcaaaatccccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17152893|gb|BM142826.1|BM142826EST: CACAGCCACATACAGATCCTAACACAATAAAGAAGATATTGGCACGCCAG GTTACTTCACCTGTTCAATGGGAAACAACAGTGAAGACTCTTCTAACCAAG
genomic: CACAGCCACATACAGATCCTAACACAATAAAGAAGATATTGGCACGCCAGgtatgctact ... catttggcagGTTACTTCACCTGTTCAATGGGAAACAACAGTGAAGACTCTTCTAACCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTAACACAATAAAGAAGATATTGGCACGCCAGgtatgctactgatacttgtttcaatctaacaagaagacatgaatgggaaataattatacctgttatgcatttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG