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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGCAATATCAAAAGTGAGCACACTGTCTGATGTTGAAGGGTTATGCGTATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAGgtaattgtacctcgtatgatgtcatccttagaattagccttgtgtgacactatctttttatttgtattgagaacatttcatttcaattgatatggatttctttgaactttaatattctcttgtgtttgtaaaattctaaaacctttaccccgttataaaaactttccttttggtacag

Basic information

species Glycine max
transcript GLYMA17G03990.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396496|gb|AI495493.1|AI495493
EST:     TATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAG                         GAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACA
genomic: TATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAGgtaattgtac ... tttggtacagGAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACA
EST: gi|14205721|gb|BG839399.1|BG839399
EST:     TATCATTTGCTGGTATTTATAACRCATCRGATCCTGTACTTGCTGTAAAG                         GAATATTTGAAGGAAGAKCCATATACAGCTGAAGAAATTGAAGCAGTTACA
genomic: TATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAGgtaattgtac ... tttggtacagGAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACA
EST: gi|14205748|gb|BG839426.1|BG839426
EST:     TATCATTTGCT-GTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAG                         GAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACA
genomic: TATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAGgtaattgtac ... tttggtacagGAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACA
EST: gi|15203268|gb|BI426036.1|BI426036
EST:     TATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAG                         GAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACA
genomic: TATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAGgtaattgtac ... tttggtacagGAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACA
EST: gi|26048836|gb|CA785289.1|CA785289
EST:     TATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAG                         GAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACA
genomic: TATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAGgtaattgtac ... tttggtacagGAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACA