Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAGCATTGTTTTCAGTCTAGAAGAAGGTCCAGGTGTACTATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAGgtgtgttgatgtgttatattaattgatattggagttttgaaattgcaactcacatccattgctcttatgtttttcttgtaaaattag

Basic information

species Glycine max
transcript GLYMA17G01610.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01610.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G11790.1 (Arabidopsis thaliana), 5'ss of exon 8
ACTAGCATTGTTTTCAGTCTAGAAGAAGGTCCAGGTGTACTATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAGgtgtgtt-----gatgtgttatat----taattgatattggagttttgaaattgcaactcacatccattgctcttatgtttttcttgtaaaattag
|| || || || |||   |||||||||||||| ||||| || ||||| |||||||| ||||||||| |  |    ||||| || || |||||  |||     ||   |||  ||    | ||   || |  | |    |||| | ||   |   |  |  || ||    || | | |         
ACAAGTATCGTGTTCTCGCTAGAAGAAGGTCCTGGTGTGCTGTTCAAGGCCTTGGCTGTTTTTGCTTTACGAAGCATTAACTTATCTAAGgtaagttccaaggaaaagttggatcctattatcagtaattcattccaaaaatagaaatatatgac-gtaacttttgctcttctttag---------

upper sequence: GLYMA17G01610.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv10s0116g01670.t01 (Vitis vinifera), 5'ss of exon 8
ACTAGCATTGTTTTCAGTCTAGAAGAAGGTCCAGGTGTACTATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAGgtgtgttgatgtgttatattaattgatattggagttttgaaattgcaactcacatccattgctcttatgttt-ttcttgta-aaattag-
|| |||||||| |||||||| || ||||| || || ||||| ||||||||| |||| || |||||| |||| ||||||| ||||||||||||      |      |  ||  ||    ||  | |||  |   ||| | | | ||    || |  |||  |  || ||||  || |||  
ACAAGCATTGTCTTCAGTCTTGATGAAGGCCCTGGGGTACTCTTCAAAGCCCTGGCTGTGTTTGCTCTGAGAGATATTAGTTTGTCAAAGgtaatgcaactaaccaagtttgtttcagtt--attttccattatgccaatgagatttcgtgtttatattctcctttttgtgcaagttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335625|gb|CO979491.1|CO979491
EST:     TATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAG                         ATAGAGAGTCGTCCTTTGAAGCAGCGCTCATTGAGGGTTGTGGATCATTTA
genomic: TATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAGgtgtgttgat ... gtaaaattagATAGAGAGTCGTCCTTTGAAGCAGCGCTCATTGAGGGTTGTGGATCATTTA