Sequence
atgc intronic sequence ATGC exonic sequenceTATTCCTTGCACTTTGGCAGAGATGAGACATTATCTTTATTTCATGCTTTGGGTAAATTTTTGCACAATAAAAGGGAGAGTGGAGTTTCAACAGAATATGgtgcgtctttgagcaaaatttgaatttcatctttctttctactcatggaaacagcagaaacataagtaggttaagttgaatctctttttaactacttaattttcttatgtggtag
Basic information
species | Glycine max |
transcript | GLYMA16G23360.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G23360.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G051138_T02 (Zea mays), 5'ss of exon 8
TATTCCTTGCACTTTGGCAGAGATGAGACATTATCTTTATTTCATGCTTTGGGTAAATTTTTGCACAATAAAAGGGAGAGTGGAGTTTCAACAGAATATGgtgcgtctttgagcaaaatttgaatttcatctttctttctactcatggaaacagcagaaacataagtaggttaagttgaatctctttttaactacttaattttcttatgtggtag-
| | ||| |||||||||||| | || |||||||||| ||||| |||||||||||||| || ||||| | | | | || ||| || |||| || ||| | | | || || | | || | | | | | ||| | | | || | | || || || |
--------CCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGGTATGTAA-
upper sequence: GLYMA16G23360.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G051138_T01 (Zea mays), 5'ss of exon 8
TATTCCTTGCACTTTGGCAGAGATGAGACATTATCTTTATTTCATGCTTTGGGTAAATTTTTGCACAATAAAAGGGAGAGTGGAGTTTCAACAGAATATGgtgcgtctttgagcaaaatttgaatttcatctttctttctactcatggaaacagcagaaacataagtaggttaagttgaatctctttttaactacttaattttcttatgtggtag-----
| | | | | ||| |||||||||||| | || |||||||||| ||||| |||||||||||||| || ||||| | | | | || ||| || || | | | | ||| | | || ||| ||| | | | || || ||| | || || || || | |||| |||
TTACCTTCCCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGgtatgt--------aagagctaagaactaccttgccct------atcaaaa----gttaacttcacaaagt--gctttaattcccaagcaaatatttgtcttcatattgtgatagaactaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58020839|gb|CX707581.1|CX707581EST: GGGTAAATTTTTGCACAATAAAAGGGAGAGTGGAGTTTCAACAGAATATG ATCAAGATGGATTTCTAATGCAAGAAAGACTTTCAAGATTACCATTAAAAA
genomic: GGGTAAATTTTTGCACAATAAAAGGGAGAGTGGAGTTTCAACAGAATATGgtgcgtcttt ... tatgtggtagATCAAGATGGATTTCTAATGCAAGAAAGACTTTCAAGATTACCATTAAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTCCTTGCACTTTGGCAGAGATGAGACATTATCTTTATTTCATGCTTTGGGTAAATTTTTGCACAATAAAAGGGAGAGTGGAGTTTCAACAGAATATGgtgcgtctttgagcaaaatttgaatttcatctttctttctactcatggaaacagcagaaacataagtaggttaagttgaatctctttttaactacttaattttcttatgtggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG