Sequence
atgc intronic sequence ATGC exonic sequenceCTGATAAGATGGGTTGCAAGCGATACTTAACTGCGAGAGACATAGTGGAAGGATCCCCAAATCTTAATCTTGCCTTTGTTGCTCATATTTTCCAGCACAGgtgagaataaccatcctcttctcaagtattatattattaagcatgtaaatcatttcatttttgggttgtggatggataaagcaaaaaaaaatggaactta...
Basic information
species | Glycine max |
transcript | GLYMA16G09360.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G09360.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g33080.1 (Oryza sativa), 5'ss of exon 7
CTGATAAGATGGGTTGCAAGCGATACTTAACTGCGAGAGACATAGTGGAAGGATCCCCAAATCTTAATCTTGCCTTTGTTGCTCATATTTTCCAGCACAGgtgagaataaccatcctcttctcaagtattatattattaagcatgtaaatcatttcatttttgggttgtggatggataaagcaaaaaaaaatggaactta-
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CAGATAGGATGGGCTGCAAAAGATATCTGACCCCAAAAGACATTGTCGACGGTTTACCAAATCTAAATCTTGCTTTTGTGGCTCATATTTTCCAGAAAAGgtatagatagttctcataatttctttatttaatttaatattttttcaaagaaattgaatttctgcttg-gtttttttattattccctccgtttcatattat
upper sequence: GLYMA16G09360.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G48460.1 (Arabidopsis thaliana), 5'ss of exon 8
CTGATAAGATGGGTTGCAAGCGATACTTAACTGCGAGAGACATAGTGGAAGGATCCCCAAATCTTAATCTTGCCTTTGTTGCTCATATTTTCCAGCACAGgtgagaataaccatcctcttctcaagtattatattattaagcatgtaaatcatttcatttttgggttgtggatggataaagcaaaaaaaaatggaactta----------
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CAGACAAAATGGGATGTAGGAGATACTTGACGGCGAAAGATATTGTTGAGGGTTCTCCAAATCTTAATCTTGCTTTTGTAGCACATATATTCCAGCACAGgtgaa-------atacacttc---aatattaaaa-acagttcatgtaaaagggaacatttttagtgtg-ggtctaacagatcagaactatgttttctttctttcccgcag
upper sequence: GLYMA16G09360.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s1365g00010.t01 (Vitis vinifera), 5'ss of exon 6
CTGATAAGATGGGTTGCAAGCGATACTTAACTGCGAGAGACATAGTGGAAGGATCCCCAAATCTTAATCTTGCCTTTGTTGCTCATATTTTCCAGCACAGgtgagaataaccatcctcttctcaagtattatatta--ttaagcatgtaaatcatttcatttttgggttgtggatggataaa-gcaaaaaaaaatggaactta--
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CAGATAGGATGGGTTGCAAGAGATACTTAACCGCAAAAGATATTGTGGAAGGTTCTCCAAATCTTAACCTTGCTTTTGTTGCACACGTTTTTCAACATAGgtgaggatgg--atccttttacgagcagttagttccatttaaatattta---ctcttggattttgagttggatataaacctctatgaggtttcataatcttcaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208312635|gb|GE112097.1|GE112097EST: GGATCCCCAAATCTTAATCTTGCCTTTGTTGCTCATATTTTCCAGCACAG GAATGGACTTTCAGCCCAGACAAAACAACAGATGTCTCTCCTTGAGACATT
genomic: GGATCCCCAAATCTTAATCTTGCCTTTGTTGCTCATATTTTCCAGCACAGgtgagaataa ... cctcttgtagGAATGGACTTTCAGCCCAGACAAAACAACAGATGTCTCTCCTTGAGACATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGATAAGATGGGTTGCAAGCGATACTTAACTGCGAGAGACATAGTGGAAGGATCCCCAAATCTTAATCTTGCCTTTGTTGCTCATATTTTCCAGCACAGgtgagaataaccatcctcttctcaagtattatattattaagcatgtaaatcatttcatttttgggttgtggatggataaagcaaaaaaaaatggaactta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaaaa