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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgattttataatgaaagcatgtctctaacagtcaacgtgccagttttgccataattatgatgcattcaaaatgcccttttaaattcaattttcg...

Basic information

species Glycine max
transcript GLYMA16G01810.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgt-tggttgattttataatgaaagcat--gtctctaacagtcaacgtg---ccagttttgccataattatgatgcattcaaaatgccc-ttttaaattcaattttcg----
| ||||| |||||||||||||| |||||| | ||||||||||| || || ||||||||||||||  ||||||||||||| ||| ||||||| || ||||||| | |   ||  ||   || |   ||   ||| |||   ||  | ||    |||   |  |   |      |  |    | | ||       |  |||   ||| |    
GGGGTGATAATGAGGTTCAGCGTACCATGTTGGAAATTGTGAACCAACTCGATGGGTTTGATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAGgtattgcatatcatactgtgtagctatttatctttaaacatctgcatgtgttcaggactatcgccacatgagtagagctgagaagctgaccacattttcttgttttgtcag

upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G110185_T04 (Zea mays), 5'ss of exon 7
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgattttataatgaaagcatgtctctaacagtcaacgtgccagttttgc-cataattatgatgcattcaaaatgc--ccttttaaattcaattttcg-----------------------------------------------------------------------------------
|||||||||||||||| ||||| || ||| | ||||| || || || |||||||||||||||||  | || |||||||||||| | ||||| ||||| ||||   ||   || ||  |    |    ||   | |  |  | ||||     | |  |  ||  |       || || |||    ||| |  ||  ||  ||                                                                                     
GTGGTGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAACTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtatttt---ttcattctactcgtgattccagatccttttatgtgcttaactcgtactcaaacacaggattttgaatatgtgaacttctgcatgaaacctttataggctccatgccttgagttgatatggcaatttattggccgtatcctaggccctggaagctgaccaccttttcccccctccag

upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgattttataa-tgaaagcatgtctctaacagtcaacgtgccagttttgccataattatga--tgcattcaaaatgcccttttaaattcaattttcg
|||| ||||||||||| ||||| || ||| | ||||| || || ||||||||||||||||||||  | || |||||||||||| | ||||| ||||| ||||   ||  |||| |   |   |   | ||||     ||    |  ||  || ||   | |    ||  |  ||||  ||     | | | |   ||  |   
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatttttttcccttctactctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat---

upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgatt--ttataatgaaagcatgtctctaacagtcaacgtgccagttttgccataattatgatgcattcaaaatgccctttta--aattcaattttcg---
|||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||| | |||||||| || ||||| ||||  |   |  | || |    ||||| |    ||    |||| |    ||  | ||  ||| |   ||     |    || ||  ||| |||| |      
GTGGGGACAATGAGGTCCAGCGTACCATGCTTGAGATTGTAAATCAGCTTGATGGGTTTGATGCTCGAGGAAATATCAAAGTTCTAATGGCAACAAATAGgttagttggctaccttcattggattattgtctgt----gttgctgtgctaccactgttagaa--atggt-tgttggggttatttttctagtaatgcaatatgacaat

upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgattttataatgaaagcatgtctctaacagtcaacgtgccagttttgccataattatgatgcattcaaa-atgcccttttaaattcaattttcg------------------------------------------------------------------------------------------------
| ||||| |||||||||||  | || ||||||||||| || ||||| ||||| || || |||||||| || || |||||||| ||||||||||| || ||||    |   |   | |   |   || | |  |         |  |   || ||      |  ||  | ||       ||  | ||       |||| ||                                                                                                 
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatct-tgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag

upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgt-tggttgattttataatgaaagcatgtctctaacagtcaacgtgccagttttgccataattatgatgcattcaaaatgcccttttaaattcaattttcg
|||| ||||| || || ||  | || ||||| || ||||| |||||||||||||| ||||||||||| || ||||| |||||||||||||| || |||||||   |  || || ||         | |||| |  || ||||  |  || |  | | |  |                                        
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTTGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtactgccgacttcatc-------taagtcttttccaatcaaacttacattactccaaacag---------------------------------------

upper sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgt-tggttgattttataatgaaagcatgtctctaacagtcaacgtgccagttttgccataattatgatgcattcaaaatgcccttttaaattcaattttcg
|||| ||||| || || ||  | || ||||| || ||||| |||||||| ||||| ||||||||||| || ||||| |||||||||||||| || |||||||   |  || || ||         | |||| |  || ||||  |  || |  | | |  |                                        
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTGGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtactgccgacttcatc-------taagtcttttccaatcaaacttacattactccaaacag---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214005791|gb|DB988688.1|DB988688
EST:     ATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: ATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|26269017|gb|CA820080.1|CA820080
EST:     GTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|6847793|gb|AW350083.1|AW350083
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|4437003|gb|AI522868.1|AI522868
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|8827828|gb|BE211558.1|BE211558
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|18039872|gb|BM308166.1|BM308166
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|26269018|gb|CA820081.1|CA820081
EST:     GTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|214007684|gb|DB986050.1|DB986050
EST:     ATGTG-CGGAATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: ATGGGTTTG-ATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|19268833|gb|BM885089.1|BM885089
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|207700573|gb|GD683680.1|GD683680
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|17963522|gb|BM270270.1|BM270270
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|298174191|gb|HO017527.1|HO017527
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|298171740|gb|HO021332.1|HO021332
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|209717051|gb|BW668705.1|BW668705
EST:     GATGGGTTTTATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAA
EST: gi|193590240|gb|FK545268.1|FK545268
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAG                         GCCTGACACTCTAGATCCTGCACTA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCTGCACTA