1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATAGACAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTTGTGACCATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatctagtgatcctactatagtagcaatttcatgtaactttagattacactctcgtgctcacatgcacttttcgtgtagggccttgaagtcttcagatatgactttgttaatatatcttcatgtgcag
species | Glycine max |
transcript | GLYMA16G00560.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATG GTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATGEST: gi|38193345|gb|CF922551.1|CF922551
genomic: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatcta ... tcatgtgcagGTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATG
EST: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATG GTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATGEST: gi|193442913|gb|FK408379.1|FK408379
genomic: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatcta ... tcatgtgcagGTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATG
EST: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATG GTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATGEST: gi|58020349|gb|CX707091.1|CX707091
genomic: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatcta ... tcatgtgcagGTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATG
EST: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATG GTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATGEST: gi|193601159|gb|FK551704.1|FK551704
genomic: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatcta ... tcatgtgcagGTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATG
EST: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATG GTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATGEST: gi|193621384|gb|FK572300.1|FK572300
genomic: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatcta ... tcatgtgcagGTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATG
EST: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATG GTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATGEST: gi|51343212|gb|CO983945.1|CO983945
genomic: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatcta ... tcatgtgcagGTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATG
EST: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATG GTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATGEST: gi|58016807|gb|CX703549.1|CX703549
genomic: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatcta ... tcatgtgcagGTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATG
EST: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATG GTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATGEST: gi|6848018|gb|AW350308.1|AW350308
genomic: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatcta ... tcatgtgcagGTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATG
EST: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATG GTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATG
genomic: CATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatcta ... tcatgtgcagGTTTACAAACATCTTTATCTATTAGACTTCCTAAGCATTCAGAAGAGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAGACAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTTGTGACCATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatctagtgatcctactatagtagcaatttcatgtaactttagattacactctcgtgctcacatgcacttttcgtgtagggccttgaagtcttcagatatgactttgttaatatatcttcatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT