1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGGTTGACAATTGTTACTCATGTACTTAAGGAAGGAGGGAAGTTTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAGgtatttgaagtttccccttatcattaagattttaggaaatgaagacttgctcatgtgcatagtttaacattaatgtaagtatgttttgccttccatgtct...
species | Glycine max |
transcript | GLYMA15G07970.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAG CTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTEST: gi|7926380|gb|AW832406.1|AW832406
genomic: TTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAGgtatttgaag ... ttgtttgcagCTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGT
EST: NTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAG CTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTEST: gi|151397919|gb|EV267792.1|EV267792
genomic: TTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAGgtatttgaag ... ttgtttgcagCTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGT
EST: TTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAG CTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTEST: gi|151411265|gb|EV281076.1|EV281076
genomic: TTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAGgtatttgaag ... ttgtttgcagCTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGT
EST: TTATTGCGAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAG CTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGT
genomic: TTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAGgtatttgaag ... ttgtttgcagCTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTGACAATTGTTACTCATGTACTTAAGGAAGGAGGGAAGTTTATTGCAAAGATATTTAGAGGAAAGGACACAAGCCTTCTATATTGTCAGgtatttgaagtttccccttatcattaagattttaggaaatgaagacttgctcatgtgcatagtttaacattaatgtaagtatgttttgccttccatgtct
- - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA