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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCGTCTCACCTTTCCAGAAAGACCTGGTGCTTTGATGAAATTTTTGGACTCCTTCAGTCCACGTTGGAATATTAGTTTATTCCATTACCGAGGGGAGgtgggaattttttactttctcttactttaatcaaacacactgcatgtggttttatgcacagacaaaactcaaatgcaggtccttaggttgttttggtgtt...

Basic information

species Glycine max
transcript GLYMA13G21230.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21230.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G10050.1 (Arabidopsis thaliana), 5'ss of exon 8
TTGTCGTCTCACCTTTCCAGAAAGACCTGGTGCTTTGATGAAATTTTTGGACTCCTTCAGTCCACGTTGGAATATTAGTTTATTCCATTACCGAGGGGAGgtgggaattttttactttctcttactttaatcaaacacactgcatgtggttttatgcacagacaaaactcaaatgcaggtccttaggttgttttggtgtt
 || ||  |||||||||| || |||||||||||| | ||||| || |||||||| ||||||||||| ||||| || |   | ||||||||||| ||  ||||     || ||| |  | ||  ||  |||  |||     |  |||    ||   |      |   ||| | |      |||||   |       |    
ATGCCGATTCACCTTTCCCGAGAGACCTGGTGCTCTAATGAACTTCTTGGACTCTTTCAGTCCACGGTGGAACATCACCCTTTTCCATTACCGTGGACAGgt-----ttgtttcccatttc--accataa--aaatgtttta-atggaacttcgagtctcctccttact-atacaatcttccttctttcaaaaaag----

upper sequence: GLYMA13G21230.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g04310.t01 (Vitis vinifera), 5'ss of exon 8
TTGTCGTCTCACCTTTCCAGAAAGACCTGGTGCTTTGATGAAATTTTTGGACTCCTTCAGTCCACGTTGGAATATTAGTTTATTCCATTACCGAGGGGAGgtgggaattttttactttct---cttactttaatcaaacacactgcatgtggttttatgcacagacaaaactc--aaatgcaggtccttaggttgttttggtgtt-----------
||||||  |    || ||||| || || ||  || ||||||| ||||||||  | ||||||||||| ||||||||||| || ||||||||||| ||| ||||  | ||||    | ||     | | |||   | |          |  | ||  || |          | ||  || | ||  || |     | || ||   |            
TTGTCGGTTTGTTTTCCCAGAGAGGCCAGGCACTCTGATGAAGTTTTTGGATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtatttaaagcctttaaaaccttcttgctttatgagtttcaaaatttgtcatacgggtgagtttcattcttaatttcacttcatccttattttctgtcctcctacccaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258876|gb|BE347023.1|BE347023
EST:     ACTCCTTCAGTCCACGTTGGAATATTAGTTTATTCCATTACCGAGGGGAG                         GGTGAAACTGGAGCAAACGTGCTAGTTGGATTACAGGTACCCAAAAGTGAG
genomic: ACTCCTTCAGTCCACGTTGGAATATTAGTTTATTCCATTACCGAGGGGAGgtgggaattt ... tgaccaacagGGTGAAACTGGAGCAAACGTGCTAGTTGGATTACAGGTACCCAAAAGTGAG