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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCGGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGgtatgccatatatcccatcaaccaaaacaacagtgaagtgaacttccaaccactacttattcatagatattgctttgaattatggtaatggccattaatt...

Basic information

species Glycine max
transcript GLYMA13G11700.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G11700.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g25310.2 (Oryza sativa), 5'ss of exon 8
ATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCGGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGgtatgccatatatcccatcaaccaaaacaacagtgaagtgaacttccaaccactacttattcatagatattgctttgaattatggtaatggccattaatt-------
 ||||| ||||| || || | |||||| || ||||| || || |||||||||   |||||||| |||||||||||||| |||||||||||| |  | ||||| ||     |  |  |  |   | |   |   | |  |||  |     |   |||||| |        |    ||   | |||   |||   || ||||       
CTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGCCGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAGgtctg-----tgccttactagggagagtca-gcttatctgatttatttgcttatacttactagggacagtcaacttatctgatgtatatgcatat-aattaacagat

upper sequence: GLYMA13G11700.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G840955_T01 (Zea mays), 5'ss of exon 2
ATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCGGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGgtatgc---catatatcccatcaaccaaaacaacagtgaagtgaacttccaaccactacttat-tcatagatattgc---tttgaattatggtaatggccattaatt
 ||||| ||||||||||| | |||||| || || ||| | || ||||||||    |||||||| |||||||||||||| |||||||||||| |  | ||||| ||    ||   ||   ||          | | || ||   |   |  |     || | || |   |||| | ||   |   |  |    |||  |  || |   
CTATGGATTGACTGAAACTTGTGCTGGAGCAGCTTTCACTGAATGGGATGATACAAGTGTGGGTCGTGTTGGTCCACCACTTCCTTGTTGCTATGTGAAGgtttgtgttcacgaatttgat-gtttgctggatctgttaacaaa---tatatttgatattcatgtggcagatgtagcagatgaaacctgcattaaaaggaatga---

upper sequence: GLYMA13G11700.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G079236_T01 (Zea mays), 5'ss of exon 9
ATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCGGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGgtatgccatata----tcccatcaaccaaaac----aacag-tgaagtgaacttccaaccactacttattcatagatattgctttgaattatggtaatggccattaatt
 ||||| ||||||||||| | |||||| || || ||| | || |||||||||   |||||||| |||||||||||||| |||||||| ||| |  | ||||| ||   || |    |    |   |   | |    ||||  || |||  |  | ||      |  | |    ||||| | | |  | | |    ||  |         
CTATGGTTTGACTGAAACCTGTGCTGGAGCAGCTTTCACTGAATGGGATGACACAAGTGTGGGTCGTGTTGGTCCACCACTTCCTTGCTGCTATGTGAAGgtttgttctacaaatttgatgtttgctggatccgttaacaaatgtagttgatattcatatggcagatgta-gcagataatacctgcattaaaaagaacagg--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207767067|gb|GD739143.1|GD739143
EST:     ACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAG                         CTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA
genomic: ACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGgtatgccata ... gcttgtatagCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA
EST: gi|208118498|gb|GD919189.1|GD919189
EST:     ACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAG                         CTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA
genomic: ACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGgtatgccata ... gcttgtatagCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA
EST: gi|11274197|gb|BF324565.1|BF324565
EST:     CTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAG                         CTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA
genomic: CTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGgtatgccata ... gcttgtatagCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA
EST: gi|298167106|gb|HO010545.1|HO010545
EST:     ACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAG                         CTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA
genomic: ACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGgtatgccata ... gcttgtatagCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA
EST: gi|11274544|gb|BF324887.1|BF324887
EST:     ACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAG                         CTTGTTTCTTGCGAAGAACGAGGGTATCTGACATCAGATAAACCAATGCCA
genomic: ACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGgtatgccata ... gcttgtatagCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA