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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATCTCAAAGGTATATCCTGCCATGTTCGTAGACAGTGTTACTGAGCTTGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTTCATTCAAGgtcagagtaggatatttgaagtttgtgttttaatactacagcttgtcagtatgtatgactttcttctagcatatcatgtctaaagaatatggatattacag

Basic information

species Glycine max
transcript GLYMA10G37850.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37850.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G23890.1 (Arabidopsis thaliana), 5'ss of exon 5
ACTATCTCAAAGGTATATCCTGCCATGTTCGTAGACAGTGTTACTGAGCTTGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTTCATTCAAGgtcagagtaggatatttgaagtttgtgttttaatactacagcttgtcagtatgtatgactttcttctagcatatcatgtctaaagaatatggatattacag
|| | |||||| || |||||||| ||||   | || | ||||||||||||||| ||||||||||| || || || |||||||||||||||| |||||||||| |||||  ||  |||||| ||||  || ||     | ||    | |  |  |    ||   |||| |  ||   | |  |                   
ACAACCTCAAAAGTGTATCCTGCTATGTATATTGAGAATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATTCAAGgtgagagt--gaactttgaattttg-attctacccgaaaagaagataaaca-atgaagctaaattct-gtttactcttttcag------------------

upper sequence: GLYMA10G37850.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTATCTCAAAGGTATATCCTGCCATGTTCGTAGACAGTGTTACTGAGCTTGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTTCATTCAAGgtcagagtaggatatttgaagtttgtgttttaatactacagcttgtcag--tatgtatgactttcttctagcatatcatgtctaaagaatatggatattacag
 |    ||||| ||||||||||||||||   |||| | ||||||||| ||||||||||||||||| || ||||| || ||||||||| | |||||||||||| |   | | || |||      |    | | |      |    || |   ||||| | |  | |||    ||| |    | |  | | ||| |         
TCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATTCAAGgtgatcatcgaattttttgtacattcactctgaagtctgaatcagtgaagttatgtttaatctgctttcttcatttttcat-tggatagtatag---------

upper sequence: GLYMA10G37850.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 6
ACTATCTCAAAGGTATATCCTGCCATGTTCGTAGACAGTGTTACTGAGCTTGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTTCATTCAAGgtcagagtaggatatttgaagtttgtgttt---taatactacag------cttgtcagtatg-tatgactttc-ttctagcatatcatg-----tctaaagaatatggatattacag
||  | |||||||||||||| || |||| | |||  | | ||||||| ||||||||||||||||| || ||||| |||||||||||||| | |||||||||| | | | | ||  |  |  |||| | ||   | ||  || ||      | | |   |  | |||| | ||  || |     || | |     ||| |  ||  ||||| || |||
ACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAGgtgataattg-attctaaacttttgagcttcgatgatgatatagaaagatcctattgtttggatatgccctttgttttgttgcattaagagttttctcactaagttggatgtttcag