1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATAACACTCGATCACATTTCCTTTAGGGAAGTTGTTTCTAGGGGCGTCACCTCCATGGACATGATGGCGCTGGCATATTGTGAAGAGAATGGAATACCTGgtttgtattttctcactgttttcattcaatgtaatcgtccaaaaatccttttttctgaggtattctttctccccag
species | Glycine max |
transcript | GLYMA10G34520.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCCATGGACATGATGGCGCTGGCATATTGTGAAGAGAATGGAATACCTG TTGTAGTCTTCAACGTGCTTGAACCGGGGAATGTTTCAAGAGCATTATGTGEST: gi|10253039|gb|BE820805.1|BE820805
genomic: CTCCATGGACATGATGGCGCTGGCATATTGTGAAGAGAATGGAATACCTGgtttgtattt ... ttctccccagTTGTAGTCTTCAACGTGCTTGAACCGGGGAATGTTTCAAGAGCATTATGTG
EST: CTCCATGGACATGATGGCGCTGGCATATTGTGAAGAGAATGGAATACCTG TTGTAGTCTTCAACGTGCTTGAACCGGGGAATGTTTCAAGAGCATTATGTGEST: gi|7284598|gb|AW597185.1|AW597185
genomic: CTCCATGGACATGATGGCGCTGGCATATTGTGAAGAGAATGGAATACCTGgtttgtattt ... ttctccccagTTGTAGTCTTCAACGTGCTTGAACCGGGGAATGTTTCAAGAGCATTATGTG
EST: CTCCATGGACATGATGGCGCTGGCATATTGTGAAGAGAATGGAATACCTG TTGTAGTCTTCAACGTGCTTGAACCGGTGAATGTTTCAAGAGCATTATGTG
genomic: CTCCATGGACATGATGGCGCTGGCATATTGTGAAGAGAATGGAATACCTGgtttgtattt ... ttctccccagTTGTAGTCTTCAACGTGCTTGAACCGGGGAATGTTTCAAGAGCATTATGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAACACTCGATCACATTTCCTTTAGGGAAGTTGTTTCTAGGGGCGTCACCTCCATGGACATGATGGCGCTGGCATATTGTGAAGAGAATGGAATACCTGgtttgtattttctcactgttttcattcaatgtaatcgtccaaaaatccttttttctgaggtattctttctccccag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA