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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGCCCTCAAGGCAGGTGTGTTCTATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaaggatcattaccagaataatgtgcatgaactgaatttctttaactctcttttatgatattaatctggtgttacctgttatcttgttaatag

Basic information

species Glycine max
transcript GLYMA10G34150.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34150.3 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os08g44810.1 (Oryza sativa), 5'ss of exon 8
CTAGCCCTCAAGGCAGGTGTGTTCTATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaaggatc----attaccagaataatgt-gcatgaactgaatttctttaactctcttttatgata--ttaatctggtgttac--ctgttatcttgttaatag---
|| || || || || ||||| || ||||| ||||| |||||| |||| || ||||| ||||||||||| |||||||| |    | |||     |||||  |  |  | | | |  |  |  | || ||  ||  |  | |  | ||  ||  | |  | |||   ||| |   ||| |   ||   
CTGGCACTAAAAGCGGGTGTATTTTATGACAAAGTATCAAATATGACTATTTGGGGGAACCACTCAACAACTCAGgtgaagatatgattagatattactggctttctattgtaatacttccaattattgtacctttctgtggggtacttttgtttattcttattactgatgatttgctctgagtag

upper sequence: GLYMA10G34150.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 8
CTAGCCCTCAAGGCAGGTGTGTTCTATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaaggatcattaccagaataatgtgcatgaactgaatttctttaactctcttttatgatattaatctggtgttacctgttatcttgttaatag
|| || ||||| |||||||| ||||||||||||||||||||||| || || ||||| || ||||| || |||||||| || |||       |  |  || ||  || ||  |    |||  ||  | | |||| ||    | || ||  || | |  | | |||          
CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaatagattctgtcttaagaacatgaatagataatattctttctattttcttgtaaaggaatactc-agtataattt-tcatcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15338126|gb|BI498782.1|BI498782
EST:     ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG                         GTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|10236029|gb|BE804977.1|BE804977
EST:     ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG                         GTCCCCGACTTCTTAAATGTTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|254344943|gb|GR851426.1|GR851426
EST:     ATGATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAG                         GTCCCTGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|151403877|gb|EV273687.1|EV273687
EST:     ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG                         GTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|27426251|gb|CA937771.1|CA937771
EST:     ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG                         GTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|193519235|gb|FK475000.1|FK475000
EST:     ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG                         GTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG