1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAATGATGCTGGTCTGGCTGCTTCTGAATTAGCCCTGGCTGTAGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttattattgaagtgcctcgattaatctagaacttccatttaagctaacctcttttattttacaag
species | Glycine max |
transcript | GLYMA10G32850.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCG GTATCCTGGAAEST: gi|14011696|gb|BG726618.1|BG726618
genomic: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttatt ... attttacaagGTATCCTGGAA
EST: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCG GTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTCEST: gi|17963753|gb|BM270498.1|BM270498
genomic: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttatt ... attttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTC
EST: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCG GTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTCEST: gi|6133980|gb|AW132430.1|AW132430
genomic: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttatt ... attttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTC
EST: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCG GTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTCEST: gi|209728924|gb|BW654991.1|BW654991
genomic: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttatt ... attttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTC
EST: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCG GTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTCEST: gi|192296643|gb|FG991211.1|FG991211
genomic: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttatt ... attttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTC
EST: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCG GTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTCEST: gi|6667618|gb|AW279069.1|AW279069
genomic: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttatt ... attttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTC
EST: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGGTGGCACTGTCG GTATCCTGAAACTGCATGCTGGAGCAATCAGCAGCATCCGCAGCAAATCTCEST: gi|298164165|gb|HO013810.1|HO013810
genomic: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttatt ... attttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTC
EST: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCG GTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTCEST: gi|193614589|gb|FK565133.1|FK565133
genomic: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttatt ... attttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTC
EST: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCG GTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTCEST: gi|192306704|gb|FG998858.1|FG998858
genomic: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttatt ... attttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTC
EST: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCG GTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTC
genomic: AGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttatt ... attttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGATGCTGGTCTGGCTGCTTCTGAATTAGCCCTGGCTGTAGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGgtaggttattattgaagtgcctcgattaatctagaacttccatttaagctaacctcttttattttacaag
- - - - - - - - - - - - - - - - - - - - - GAGAGG