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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatttctcatctataattttccgaattataattagattcataatgcatcgaaatgtttattatattctgattttttgtttgctatgatgtttgattgcttgtttcctatttctag

Basic information

species Glycine max
transcript GLYMA10G28080.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208169199|gb|GD969582.1|GD969582
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|16341820|gb|BI967415.1|BI967415
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|31467514|gb|CD409542.1|CD409542
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|120529357|gb|EH257491.1|EH257491
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|9900501|gb|BE609469.1|BE609469
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|207793696|gb|GD766750.1|GD766750
EST:     CACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: CACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|4260100|gb|AI416596.1|AI416596
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|208104789|gb|GD907328.1|GD907328
EST:     CACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: CACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|57574088|gb|CX547063.1|CX547063
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|193450760|gb|FK411270.1|FK411270
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|192328118|gb|FK022842.1|FK022842
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|9900510|gb|BE609478.1|BE609478
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|31309279|gb|CD394482.1|CD394482
EST:     GGTCAGCACCAATGGCAAGCACTGAGAACCAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
genomic: GGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|120529461|gb|EH257595.1|EH257595
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACCAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACCAAATAACGGAG
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAG
EST: gi|7326454|gb|AW620263.1|AW620263
EST:     NTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATT
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATT
EST: gi|208295128|gb|GE091265.1|GE091265
EST:     TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGG                         GGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACA
genomic: TTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatt ... ctatttctagGGAAATATTGTAAATGTTATCAGTACCATTCAGGCCAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGTGACATGGAGGgtaaagaatttctcatctataattttccgaattataattagattcataatgcatcgaaatgtttattatattctgattttttgtttgctatgatgtttgattgcttgtttcctatttctag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG