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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATTGTTAAGgtacatttctcaaacacattacatttgttatgtaatcacaaatgtgtatgtgctagtactgaaggttgggcctgatcactagttcaataatccag

Basic information

species Glycine max
transcript GLYMA10G22860.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G22860.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G50240.2 (Arabidopsis thaliana), 5'ss of exon 8
GTATGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATTGTTAAGgtacatttctcaaacacattacatttgttatgtaatcacaaatgtgtatgtgctagtactgaaggttgggcctgatcactagttcaataatccag
||| ||||||| ||| || || || || || ||||| |||||||| |||||||||||  | ||||||||||||||| ||      || |  ||    || ||   || ||     | ||  |    ||  |   || |||       |||   |              
GTACGAGTTATATGTAGGTCAGCCTCCCTTCTACACCAATTCTGTGTATGCTCTCATTCGTCACATTGTTAAGgtatatc-----aatatttttttatttttccatagtc-----tatgcttaaagtatgagctaacgttttagtgaatcttcaag------------

upper sequence: GLYMA10G22860.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 8
GTATGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATTGTTAAGgtacattt-ctcaaacacattacatttgttatgtaatcacaaatgtgtatgtgctagtactgaaggttgggcctgatcactagttcaataatccag
|||||| || |||||||| || || || ||||| |||||||| |||||||| |||||| | |||||  ||||||||||||| ||||||| |  ||  || ||| ||||          |  |  |  || | | |||  |      ||||  |   ||  ||  |||||
GTATGAATTGTTTGTTGGTCAGCCTCCCTTTTATACAAATTCAGTATATGCACTCATCCGGCACATCATTAAGgtacattttctcaaactccatattttagttctgtaggtttgtgcattaaaata-tactgcagaaaatacaagttgatgtcacatttgattttccag