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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCGTTTCACCTTTCCAGAAAGACCTGGTGCTTTGATGAAATTTTTGGACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattttttattttctatttctttaatcaaacacattgcatggggttttatggcaaaacttaaatgcagttccttaggtcatcttggtgttgttct...

Basic information

species Glycine max
transcript GLYMA10G07340.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07340.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g50510.1 (Oryza sativa), 5'ss of exon 8
CTGTCGTTTCACCTTTCCAGAAAGACCTGGTGCTTTGATGAAATTTTTGGACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattttttattttctatttctttaatcaaacacattgcatggggttttatggcaaaacttaaatgcagttc--cttaggtcatcttggtgttgttct-
 |  || ||||  || |||||||| ||||||||  | ||||||||||||||  | ||||| || || |||||||||||  | ||||||||||| |   ||||  |  |     ||||  ||||  |    |      |  |  | |  || || |   |||| |  |||    | |  || |  || || |  | |||   | 
TTACCGGTTCATTTTCCCAGAAAGGCCTGGTGCACTTATGAAATTTTTGGATGCATTCAGCCCCCGCTGGAATATCAGCCTTTTCCATTACCGTGCACAGgtgtg--tgacagatttattattcatcagtttccctgctgtaaa-gtagtcttgtatgaaaattgcaatctcatgcatctgaaatcgtcattttattgccatc

upper sequence: GLYMA10G07340.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G569855_T01 (Zea mays), 5'ss of exon 8
CTGTCGTTTCACCTTTCCAGAAAGACCTGGTGCTTTGATGAAATTTTTGGACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgta-----ggaattttttattttctatttctttaatcaaacacattgcatggggttttatggcaaaacttaaatgcagttccttaggtcatcttggtgttgttct-
 |  || ||||  ||||||||||| ||||||||  | ||||||||||||||  | ||||| || |||||||| |||||| | || |||||||| |   |||||     ||| |||| | | |  | || || || |       |||  |||  || ||||    ||  | |||    | |||||  |  |  |   ||     |  
TTACCGGTTCATTTTTCCAGAAAGGCCTGGTGCCCTTATGAAATTTTTGGATGCATTCAGCCCTCGTTGGAACATCAGTCTTTTTCATTACCGTGCACAGgtacatgaggagttttgtctgtagttttcctatagtagtgtctatt--atgcagtcttat----aatttgaaacaatgatccttttgctacttatttgaaagacgg

upper sequence: GLYMA10G07340.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G10050.1 (Arabidopsis thaliana), 5'ss of exon 8
CTGTCGTTTCACCTTTCCAGAAAGACCTGGTGCTTTGATGAAATTTTTGGACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattttttattttctatttctttaatcaaacacattgcatggggttttatggcaaaacttaaatgcagttccttaggtcatcttggtgttgttct
 || || ||||||||||| || |||||||||||| | ||||| || |||||| | ||||||||||| ||||| ||||   | ||||||||||| ||  ||||         || ||| | |||||   |   |||    ||  ||||   ||   | |    | | | |  |    |||   || | |       |    
ATGCCGATTCACCTTTCCCGAGAGACCTGGTGCTCTAATGAACTTCTTGGACTCTTTCAGTCCACGGTGGAACATCACCCTTTTCCATTACCGTGGACAGgt---------ttgtttcccatttcaccataaaaatgtttta-atggaacttcgagtctcctccttactatacaatcttccttc-tttcaaaaaag----

upper sequence: GLYMA10G07340.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g04310.t01 (Vitis vinifera), 5'ss of exon 8
CTGTCGTTTCACCTTTCCAGAAAGACCTGGTGCTTTGATGAAATTTTTGGACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattttttattttcta---tttctttaatcaaacacattgcatggggttttatggcaaaacttaaatgcagttccttaggtcatcttggtgtt--gttct------------
 ||||| ||    || ||||| || || ||  || ||||||| ||||||||  | ||||||||||| |||||||| || || ||||||||||| ||| ||||| | ||||      ||  |    |||||   | |      |   |    ||  || ||   |  || | |     |  | |  ||||| |  | ||  || ||            
TTGTCGGTTTGTTTTCCCAGAGAGGCCAGGCACTCTGATGAAGTTTTTGGATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtatttaaagcctttaaaaccttcttgctttatgagtttcaaaatttgtcatacgggtgagtttcattcttaatt-tcacttcatccttattttctgtcctcctacccaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425917|gb|CA937437.1|CA937437
EST:     ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAG                         GGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
genomic: ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattt ... ttaccaacagGGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
EST: gi|57574159|gb|CX547134.1|CX547134
EST:     ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAG                         GGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
genomic: ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattt ... ttaccaacagGGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
EST: gi|57574425|gb|CX547400.1|CX547400
EST:     ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAG                         GGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
genomic: ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattt ... ttaccaacagGGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
EST: gi|7796099|gb|AW781505.1|AW781505
EST:     ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAG                         GGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
genomic: ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattt ... ttaccaacagGGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
EST: gi|11413213|gb|BF425224.1|BF425224
EST:     ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAG                         GGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
genomic: ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattt ... ttaccaacagGGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
EST: gi|8669585|gb|BE190692.1|BE190692
EST:     ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAG                         GGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
genomic: ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattt ... ttaccaacagGGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
EST: gi|298180804|gb|HO022243.1|HO022243
EST:     ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAG                         GGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
genomic: ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattt ... ttaccaacagGGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
EST: gi|192314653|gb|FK008483.1|FK008483
EST:     ACCCCTCCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAG                         GGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
genomic: ACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattt ... ttaccaacagGGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
EST: gi|192314654|gb|FK008484.1|FK008484
EST:     CCCCCTCCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAG                         GGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG
genomic: CCCCTTC-AGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGgtaggaattt ... ttaccaacagGGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAG