Sequence
atgc intronic sequence ATGC exonic sequenceGGCAGATTCTGCAGCTGTGGCAATCACCACGACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGgtattacttgttactatttgttgctcacttgttttaagttgatacagctagtttgtatgtaactgttttataagcacacctttgacatttgtatggatgg...
Basic information
species | Glycine max |
transcript | GLYMA10G05090.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 5'ss of exon 8
GGCAGATTCTGCAGCTGTGGCAATCACCACGACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGgtattacttgttactatttgttgctcacttgttttaagttgatacagctagtttgtatgtaactgttttataagcacacctttgacatttgtatggatgg
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TGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATCGCTGTACAGACAGAGgtttgactt-----tcttagcctcgta-ttattctcattaggtttatttggtttgacattatctttgttcttatcatctcttta----ttgaaaagttag
upper sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G37500.1 (Arabidopsis thaliana), 5'ss of exon 9
GGCAGATTCTGCAGCTGTGGCAATCACCACGACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGgtattacttgttactatttgttgctcacttgttttaagttgatacagctagtttgtatgtaactgttttataagcacacctttgacatttgtatggatgg
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GGCAGATTCTGCTGCTGTAGCTATCACAACAACAGATCTTGTAAGCAAGAGTGTTGCAGTTGAATCACAGgtaggtttaagaa--acacgttgtatactctattt---ctagcattgatatctcttacaaaatttttgacattgctcag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16277576|gb|BI942452.1|BI942452EST: CAATCACCACGACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTG GTTGGAGGAACTAGGGTCAGAGTTGGGGGAATGGCTAAAGGTTCTGGAATG
genomic: CAATCACCACGACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGgtattacttg ... tgttggttagGTTGGAGGAACTAGGGTCAGAGTTGGGGGAATGGCTAAAGGTTCTGGAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCAGATTCTGCAGCTGTGGCAATCACCACGACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGgtattacttgttactatttgttgctcacttgttttaagttgatacagctagtttgtatgtaactgttttataagcacacctttgacatttgtatggatgg
- - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - GCAAGA