1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAAGTCCTTGTGGAGCTGGCAAATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgtttttgtaatctttttgatgaatcaatgaccaagttaggtcttgatgtttattctcatttttttatcag
species | Glycine max |
transcript | GLYMA10G00610.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCACTGTGGACTGACACCAAGAAAGTTGCCA GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTGEST: gi|8403273|gb|BE058907.1|BE058907
genomic: ATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTG
EST: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCA GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTGEST: gi|16344608|gb|BI970203.1|BI970203
genomic: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTG
EST: TGATCCAAAGCTTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCA GACCTGGTGGAANNNAATCCCCCTTATTGCAGTTGATGTTCTCACTAAGTTEST: gi|26057582|gb|CA800496.1|CA800496
genomic: TGATCCAAAGC-TTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAAT-CCCCTTATTGCAGTTGATGTTCTCACTAAGTT
EST: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCA GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTGEST: gi|14008705|gb|BG725309.1|BG725309
genomic: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTG
EST: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCA GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTGEST: gi|21887209|gb|BQ740422.1|BQ740422
genomic: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTG
EST: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCA GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTEST: gi|151393880|gb|EV263751.1|EV263751
genomic: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGT
EST: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCA GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTG
genomic: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGTCCTTGTGGAGCTGGCAAATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgtttttgtaatctttttgatgaatcaatgaccaagttaggtcttgatgtttattctcatttttttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA