1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AATTGTCATGGATGATGCAGACATCAAATTGGCTGTACGCTCTATTTTGTTTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaaccaatttaaaaaattgaatttcataattttaatgcaatcacgtgtgatttttttaagatatatttaatttttaatttagcttccttgtactgcag
species | Glycine max |
transcript | GLYMA09G08150.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTG TTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTCEST: gi|193671020|gb|FK608298.1|FK608298
genomic: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTC
EST: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTG TTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTCEST: gi|193541518|gb|FK499200.1|FK499200
genomic: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTC
EST: TTGCTGCTGTGGGTACTACTGGTCAGCGGTG-ACAACTTGTCGTAGACTG TTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTCEST: gi|193630538|gb|FK580885.1|FK580885
genomic: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTC
EST: CTGGTCAGCGGTGTACAACTTGTCGTAGACTG TTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTCEST: gi|208080318|gb|GD878914.1|GD878914
genomic: CTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTC
EST: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTG TTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTCEST: gi|254341577|gb|GR852714.1|GR852714
genomic: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTC
EST: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTG TTTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGEST: gi|193666137|gb|FK611762.1|FK611762
genomic: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaac ... tgtactgcagTTT-CTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTG
EST: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTG TTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTCEST: gi|208321376|gb|GE119513.1|GE119513
genomic: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTC
EST: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTG TTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTCEST: gi|19452651|gb|BM954061.1|BM954061
genomic: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTC
EST: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTG TTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTC
genomic: TTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTATACAGACGTACTAGACCAACTTGTTGAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGTCATGGATGATGCAGACATCAAATTGGCTGTACGCTCTATTTTGTTTGCTGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGTCGTAGACTGgtattagaaccaatttaaaaaattgaatttcataattttaatgcaatcacgtgtgatttttttaagatatatttaatttttaatttagcttccttgtactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT