Sequence
atgc intronic sequence ATGC exonic sequenceCAGTCACTTTCTGCTTTTAATCATATCCTTGGCGACTTTTCCCTCATTGTGTACCAGTTTCAAGCTATAAGTGCTTTTTCTGCTGTTATTAATCGGTTAGgtactgcattatttttcccttatctttcctgtaacattttgatatatgcaaatctcatgatagatatgagcatgagtgaatgaactacaaatttttactc...
Basic information
species | Glycine max |
transcript | GLYMA08G17110.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G17110.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g11946.1 (Oryza sativa), 5'ss of exon 6
CAGTCACTTTCTGCTTTTAATCATATCCTTGGCGACTTTTCCCTCATTGTGTACCAGTTTCAAGCTATAAGTGCTTTTTCTGCTGTTATTAATCGGTTAGgtactgcattatttttcccttatctttcctg-taacat-tttgatatatgcaaatctcatgatagatatgagcatgagtgaatgaactacaaatttttactc
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CAATCAGTGTCTGCTTTCAATCATATCCTTAGTGATTTTTCTCTCATTGTGTTCCAGTTTCAGTCAATTAGTGCATTCTCGGCGGTTATTGATCGTCTAGgtgatgcctttttctctctcagcattgcttgctaacatatctagactattctaattgaacaataatcttcag------------------------------
upper sequence: GLYMA08G17110.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G54350.1 (Arabidopsis thaliana), 5'ss of exon 5
CAGTCACTTTCTGCTTTTAATCATATCCTTGGCGACTTTTCCCTCATTGTGTACCAGTTTCAAGCTATAAGTGCTTTTTCTGCTGTTATTAATCGGTTAGgtac-tgcattatttttcccttatctttcctgtaacattttgatatatgcaaatctcatgatagatatgagcatgagtgaatgaactacaaatttttactc--
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CAGTCAGTGTCTGCATTCAATCATATCCTAGGAGACTTCTCGCTCGTTGTCTATCAGTTTCAAGCTATCAGCTCTTTTTCTGCTGTCATTGATCGACTAGgtagattaattatgtattctgca-ctctcttttaatgttct-atatatatactacttgttgcttaca-gatcacacaagaccttagatcaataccgaacaaca
upper sequence: GLYMA08G17110.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0085g01190.t01 (Vitis vinifera), 5'ss of exon 6
CAGTCACTTTCTGCTTTTAATCATATCCTTGGCGACTTTTCCCTCATTGTGTACCAGTTTCAAGCTATAAGTGCTTTTTCTGCTGTTATTAATCGGTTAGgtactgcattatttttcccttatcttt--cctgtaacattttgatatatgcaaatctcatgatagatatgagcatgagtgaatgaactacaaatttttactc-------
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CAGTCTGTATCTGCTTTCAATCACATCCTTGGTGATTTTTCCCTCATTGTATACCAGTTTCAGGCGATAAGTGCCTTCTCAGCTGTCATTGATCGACTTGgtatt---tggtttttcctttatctcctgcatgttttgtttgaatttaaccaaat---aaacttgaaaggagattggttagtt---ccttaacttgctactaagtgaacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120493638|gb|EH221805.1|EH221805EST: GTACCAGTTTCAAGCTATAAGTGCTTTTTCTGCTGTTATTAATCGGTTAG GTGAATTTGATGATGTTTTGGACAGAAGTAGCTCTAATTCTCTCACTGATA
genomic: GTACCAGTTTCAAGCTATAAGTGCTTTTTCTGCTGTTATTAATCGGTTAGgtactgcatt ... gcttatgcagGTGAATTTGATGATGTTTTGGACAGAAGTAGCTCTAATTCTCTCACTGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGTCACTTTCTGCTTTTAATCATATCCTTGGCGACTTTTCCCTCATTGTGTACCAGTTTCAAGCTATAAGTGCTTTTTCTGCTGTTATTAATCGGTTAGgtactgcattatttttcccttatctttcctgtaacattttgatatatgcaaatctcatgatagatatgagcatgagtgaatgaactacaaatttttactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT